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X-RAY DIFFRACTION
Materials and Methods page
4GU1
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 291.0
    Details 0.2M Sodium chloride, 0.1M Na/K phosphate, 7% PEG 8000, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 89.16 α = 90
    b = 89.22 β = 90
    c = 342.54 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type ADSC QUANTUM 315r
    Collection Date 2010-03-13
     
    Diffraction Radiation
    Monochromator SAGITALLY FOCUSED Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRF BEAMLINE BL17U
    Wavelength List 0.97947
    Site SSRF
    Beamline BL17U
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.9
    Resolution(Low) 50
    Number Reflections(Observed) 57805
    Percent Possible(Observed) 91.79
    B(Isotropic) From Wilson Plot 83.09
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.939
    Resolution(Low) 39.562
    Cut-off Sigma(F) 1.33
    Number of Reflections(Observed) 57763
    Number of Reflections(R-Free) 2922
    Percent Reflections(Observed) 97.48
    R-Factor(Observed) 0.1872
    R-Work 0.185
    R-Free 0.2279
     
    Temperature Factor Modeling
    Mean Isotropic B Value 83.4378
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9389
    Shell Resolution(Low) 2.9871
    Number of Reflections(R-Free) 87
    Number of Reflections(R-Work) 1743
    R-Factor(R-Work) 0.309
    R-Factor(R-Free) 0.4458
    Percent Reflections(Observed) 66.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9871
    Shell Resolution(Low) 3.0386
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 2604
    R-Factor(R-Work) 0.2953
    R-Factor(R-Free) 0.3345
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0386
    Shell Resolution(Low) 3.0938
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2624
    R-Factor(R-Work) 0.2942
    R-Factor(R-Free) 0.3653
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0938
    Shell Resolution(Low) 3.1533
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2627
    R-Factor(R-Work) 0.2846
    R-Factor(R-Free) 0.3761
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1533
    Shell Resolution(Low) 3.2176
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2626
    R-Factor(R-Work) 0.2803
    R-Factor(R-Free) 0.3601
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2176
    Shell Resolution(Low) 3.2875
    Number of Reflections(R-Free) 116
    Number of Reflections(R-Work) 2634
    R-Factor(R-Work) 0.2601
    R-Factor(R-Free) 0.318
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2875
    Shell Resolution(Low) 3.364
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2582
    R-Factor(R-Work) 0.2579
    R-Factor(R-Free) 0.3022
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.364
    Shell Resolution(Low) 3.4481
    Number of Reflections(R-Free) 169
    Number of Reflections(R-Work) 2671
    R-Factor(R-Work) 0.256
    R-Factor(R-Free) 0.3234
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4481
    Shell Resolution(Low) 3.5412
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2618
    R-Factor(R-Work) 0.2336
    R-Factor(R-Free) 0.35
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5412
    Shell Resolution(Low) 3.6454
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2600
    R-Factor(R-Work) 0.2153
    R-Factor(R-Free) 0.267
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6454
    Shell Resolution(Low) 3.7629
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2644
    R-Factor(R-Work) 0.2066
    R-Factor(R-Free) 0.2191
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7629
    Shell Resolution(Low) 3.8973
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2620
    R-Factor(R-Work) 0.195
    R-Factor(R-Free) 0.2219
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8973
    Shell Resolution(Low) 4.0532
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2690
    R-Factor(R-Work) 0.1752
    R-Factor(R-Free) 0.2447
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0532
    Shell Resolution(Low) 4.2375
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2634
    R-Factor(R-Work) 0.1622
    R-Factor(R-Free) 0.2075
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2375
    Shell Resolution(Low) 4.4606
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2666
    R-Factor(R-Work) 0.1547
    R-Factor(R-Free) 0.2151
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4606
    Shell Resolution(Low) 4.7397
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.1428
    R-Factor(R-Free) 0.1855
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7397
    Shell Resolution(Low) 5.1049
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2699
    R-Factor(R-Work) 0.1346
    R-Factor(R-Free) 0.1605
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1049
    Shell Resolution(Low) 5.6173
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 2692
    R-Factor(R-Work) 0.1469
    R-Factor(R-Free) 0.2188
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.6173
    Shell Resolution(Low) 6.4272
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 2723
    R-Factor(R-Work) 0.1613
    R-Factor(R-Free) 0.1986
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.4272
    Shell Resolution(Low) 8.0862
    Number of Reflections(R-Free) 169
    Number of Reflections(R-Work) 2737
    R-Factor(R-Work) 0.1652
    R-Factor(R-Free) 0.2085
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 8.0862
    Shell Resolution(Low) 39.5658
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2733
    R-Factor(R-Work) 0.1759
    R-Factor(R-Free) 0.1812
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 19.774
    f_plane_restr 0.01
    f_chiral_restr 0.092
    f_angle_d 1.342
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 11830
    Nucleic Acid Atoms 0
    Heterogen Atoms 118
    Solvent Atoms 23
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (phenix.refine)
    model building PHASER
    data collection HKL-2000