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X-RAY DIFFRACTION
Materials and Methods page
4GSR
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6.5
    Temperature 296.0
    Details 50mM calcium chloride, 100mM bis-tris, 30%(v/v) polyethylene glycol monomethyl ether 550, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 296K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 135.66 α = 90
    b = 58.45 β = 94.28
    c = 40.96 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU SATURN A200
    Collection Date 2011-11-12
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL26B1
    Wavelength List 1.00600
    Site SPRING-8
    Beamline BL26B1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 7.4
    Observed Criterion Sigma(I) 7.4
    Resolution(High) 1.79
    Resolution(Low) 20
    Number Reflections(All) 59330
    Number Reflections(Observed) 58915
    Percent Possible(Observed) 99.3
     
    High Resolution Shell Details
    Resolution(High) 1.79
    Resolution(Low) 1.82
    Percent Possible(All) 86.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.79
    Resolution(Low) 20.0
    Number of Reflections(all) 28770
    Number of Reflections(Observed) 28601
    Number of Reflections(R-Free) 1524
    Percent Reflections(Observed) 99.41
    R-Factor(All) 0.1963
    R-Factor(Observed) 0.1963
    R-Work 0.19468
    R-Free 0.22583
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 24.501
    Anisotropic B[1][1] -0.89
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.18
    Anisotropic B[2][2] -0.61
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.48
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.789
    Shell Resolution(Low) 1.835
    Number of Reflections(R-Free) 89
    Number of Reflections(R-Work) 1917
    R-Factor(R-Work) 0.237
    R-Factor(R-Free) 0.309
    Percent Reflections(Observed) 93.65
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.005
    r_chiral_restr 0.078
    r_dihedral_angle_4_deg 10.071
    r_dihedral_angle_3_deg 12.066
    r_dihedral_angle_2_deg 29.491
    r_dihedral_angle_1_deg 5.608
    r_angle_refined_deg 1.153
    r_bond_refined_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2014
    Nucleic Acid Atoms 0
    Heterogen Atoms 23
    Solvent Atoms 230
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution AutoSol
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building AutoSol
    data collection HKL-2000