X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6
Temperature 292.0
Details 32% isopropanol, 100 mM MES , pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 45.27 α = 90
b = 47.64 β = 90
c = 140.91 γ = 90
Symmetry
Space Group P 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 19.73 100.0 -- -- -- -- 20075 20075 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 19.73 -- 1.34 -- 20069 1035 93.99 0.2115 0.2115 0.209 0.2583 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.1051 -- 128 2597 0.26 0.3231 -- 92.0
X Ray Diffraction 2.1051 2.2368 -- 143 2640 0.2239 0.279 -- 93.0
X Ray Diffraction 2.2368 2.4092 -- 147 2658 0.214 0.2891 -- 93.0
X Ray Diffraction 2.4092 2.6512 -- 154 2701 0.2204 0.258 -- 94.0
X Ray Diffraction 2.6512 3.0336 -- 175 2706 0.2176 0.2879 -- 95.0
X Ray Diffraction 3.0336 3.8175 -- 148 2789 0.2069 0.2885 -- 95.0
X Ray Diffraction 3.8175 19.7334 -- 140 2943 0.1951 0.2083 -- 95.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.075
f_dihedral_angle_d 13.706
f_angle_d 1.091
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1824
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 104

Software

Computing
Computing Package Purpose
MAR345dtb Data Collection
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
Phaser Structure Solution
PHENIX (phenix.refine: 1.8_1062) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8_1062) refinement
Phaser model building
MAR345dtb data collection