POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4GPZ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 293.0
    Details PEG3350, MES, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 77.36 α = 90
    b = 81.17 β = 90
    c = 90.38 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 180
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2011-10-11
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.97918
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.65
    Resolution(Low) 60.48
    Number Reflections(All) 72475
    Number Reflections(Observed) 72475
    Percent Possible(Observed) 100.0
     
    High Resolution Shell Details
    Resolution(High) 1.65
    Resolution(Low) 1.71
    Percent Possible(All) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.65
    Resolution(Low) 60.39
    Number of Reflections(Observed) 65490
    Number of Reflections(R-Free) 3493
    Percent Reflections(Observed) 99.86
    R-Factor(Observed) 0.18647
    R-Work 0.18502
    R-Free 0.21382
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.291
    Anisotropic B[1][1] 2.29
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.44
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.86
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.65
    Shell Resolution(Low) 1.693
    Number of Reflections(R-Free) 243
    Number of Reflections(R-Work) 4495
    R-Factor(R-Work) 0.276
    R-Factor(R-Free) 0.312
    Percent Reflections(Observed) 99.71
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.015
    r_chiral_restr 0.303
    r_dihedral_angle_4_deg 12.937
    r_dihedral_angle_3_deg 13.634
    r_dihedral_angle_2_deg 35.924
    r_dihedral_angle_1_deg 5.951
    r_angle_refined_deg 2.471
    r_bond_refined_d 0.025
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3844
    Nucleic Acid Atoms 0
    Heterogen Atoms 25
    Solvent Atoms 386
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASES
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building PHASES
    data collection HKL-2000