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X-RAY DIFFRACTION
Materials and Methods page
4GPO
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    Temperature 291.0
    Details 20mM sodium acetate, 100-300mM ammonium sulfate, 26~30% PEG200, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 229.66 α = 90
    b = 79.59 β = 101.83
    c = 69.04 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type PSI PILATUS 6M
    Collection Date 2011-09-30
     
    Diffraction Radiation
    Monochromator Si 111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X25
    Wavelength List 1.1000
    Site NSLS
    Beamline X25
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 3.35
    Resolution(Low) 67.57
    Number Reflections(Observed) 17463
    Percent Possible(Observed) 98.2
    R Merge I(Observed) 0.141
    Redundancy 4.3
     
    High Resolution Shell Details
    Resolution(High) 3.35
    Resolution(Low) 3.44
    Percent Possible(All) 97.0
    Mean I Over Sigma(Observed) 1.7
    Redundancy 4.2
    Number Unique Reflections(All) 1275
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.5
    Resolution(Low) 29.779
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 13006
    Number of Reflections(R-Free) 642
    Percent Reflections(Observed) 83.62
    R-Factor(Observed) 0.3121
    R-Work 0.3099
    R-Free 0.3546
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 2.4683
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 12.3701
    Anisotropic B[2][2] 3.7643
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -9.5631
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5
    Shell Resolution(Low) 3.7698
    Number of Reflections(R-Free) 73
    Number of Reflections(R-Work) 1428
    R-Factor(R-Work) 0.4767
    R-Factor(R-Free) 0.5524
    Percent Reflections(Observed) 48.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7698
    Shell Resolution(Low) 4.1483
    Number of Reflections(R-Free) 100
    Number of Reflections(R-Work) 2160
    R-Factor(R-Work) 0.3692
    R-Factor(R-Free) 0.4754
    Percent Reflections(Observed) 74.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1483
    Shell Resolution(Low) 4.7464
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2881
    R-Factor(R-Work) 0.2667
    R-Factor(R-Free) 0.3223
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7464
    Shell Resolution(Low) 5.9721
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2931
    R-Factor(R-Work) 0.2949
    R-Factor(R-Free) 0.3491
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.9721
    Shell Resolution(Low) 29.7804
    Number of Reflections(R-Free) 177
    Number of Reflections(R-Work) 2964
    R-Factor(R-Work) 0.2928
    R-Factor(R-Free) 0.2971
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.084
    f_dihedral_angle_d 17.26
    f_angle_d 1.136
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4442
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building PHASER
    data collection HKL-2000