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X-RAY DIFFRACTION
Materials and Methods page
4GPM
  •   Crystallization Hide
    Crystallization Experiments
    Method Microbatch crystallization under oil
    pH 9
    Temperature 291.0
    Details 40% PEG 1000, 0.1M lithium chloride, 0.1M TAPS, pH 9.0 , Microbatch crystallization under oil, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 48.09 α = 90
    b = 56.82 β = 90
    c = 105.6 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR CCD 165 mm
    Collection Date 2012-08-09
     
    Diffraction Radiation
    Monochromator Si 111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X4C
    Wavelength List 0.97915
    Site NSLS
    Beamline X4C
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.99
    Resolution(Low) 50
    Number Reflections(All) 37872
    Number Reflections(Observed) 35751
    Percent Possible(Observed) 94.4
    R Merge I(Observed) 0.1
    B(Isotropic) From Wilson Plot 23.73
    Redundancy 3.2
     
    High Resolution Shell Details
    Resolution(High) 1.99
    Resolution(Low) 2.06
    Percent Possible(All) 80.3
    R Merge I(Observed) 0.331
    Mean I Over Sigma(Observed) 3.0
    Redundancy 2.7
    Number Unique Reflections(All) 3796
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.002
    Resolution(Low) 30.139
    Cut-off Sigma(F) 0.65
    Number of Reflections(Observed) 35590
    Number of Reflections(R-Free) 1808
    Percent Reflections(Observed) 94.59
    R-Factor(Observed) 0.177
    R-Work 0.176
    R-Free 0.202
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 27.95
    Anisotropic B[1][1] 1.206
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 3.477
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -4.683
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.002
    Shell Resolution(Low) 2.056
    Number of Reflections(R-Free) 101
    Number of Reflections(R-Work) 2262
    R-Factor(R-Work) 0.198
    R-Factor(R-Free) 0.26
    Percent Reflections(Observed) 82.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.056
    Shell Resolution(Low) 2.117
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2507
    R-Factor(R-Work) 0.186
    R-Factor(R-Free) 0.187
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.117
    Shell Resolution(Low) 2.185
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2570
    R-Factor(R-Work) 0.18
    R-Factor(R-Free) 0.225
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.185
    Shell Resolution(Low) 2.263
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 2537
    R-Factor(R-Work) 0.193
    R-Factor(R-Free) 0.264
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.263
    Shell Resolution(Low) 2.354
    Number of Reflections(R-Free) 171
    Number of Reflections(R-Work) 2520
    R-Factor(R-Work) 0.175
    R-Factor(R-Free) 0.256
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.354
    Shell Resolution(Low) 2.461
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2573
    R-Factor(R-Work) 0.176
    R-Factor(R-Free) 0.236
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.461
    Shell Resolution(Low) 2.591
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2558
    R-Factor(R-Work) 0.184
    R-Factor(R-Free) 0.211
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.591
    Shell Resolution(Low) 2.753
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2665
    R-Factor(R-Work) 0.191
    R-Factor(R-Free) 0.232
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.753
    Shell Resolution(Low) 2.965
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2669
    R-Factor(R-Work) 0.196
    R-Factor(R-Free) 0.26
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.965
    Shell Resolution(Low) 3.263
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2720
    R-Factor(R-Work) 0.191
    R-Factor(R-Free) 0.235
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.263
    Shell Resolution(Low) 3.735
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2745
    R-Factor(R-Work) 0.164
    R-Factor(R-Free) 0.167
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.735
    Shell Resolution(Low) 4.702
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2735
    R-Factor(R-Work) 0.141
    R-Factor(R-Free) 0.131
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.702
    Shell Resolution(Low) 30.142
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2721
    R-Factor(R-Work) 0.184
    R-Factor(R-Free) 0.183
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 14.531
    f_plane_restr 0.006
    f_chiral_restr 0.088
    f_angle_d 1.194
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2358
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 177
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution BALBES
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    data extraction pdb_extract version: 3.100
    refinement phenix