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X-RAY DIFFRACTION
Materials and Methods page
4GOW
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 298.0
    Details 1.6M ammonium sulfate, 0.2M sodium citrate (pH 6.0), 0.1M sodium tartrate, 4% isopropanol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 104.07 α = 90
    b = 104.07 β = 90
    c = 113.73 γ = 120
     
    Space Group
    Space Group Name:    P 65 2 2
     
     
  •   Diffraction Hide
    Diffraction Detector
    Detector CCD
     
    Diffraction Radiation
    Monochromator LN2-cooled monochromator Si(220), Phi=0 or 90 degrees
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRL BEAMLINE BL12-2
    Wavelength List 1.006
    Site SSRL
    Beamline BL12-2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.6
    Resolution(Low) 90.13
    Number Reflections(All) 11737
    Number Reflections(Observed) 11737
    Percent Possible(Observed) 100.0
    Redundancy 16.7
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.74
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.965
    Mean I Over Sigma(Observed) 0.8
    R-Sym I(Observed) 0.965
    Redundancy 12.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 48.093
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 11699
    Number of Reflections(R-Free) 562
    Percent Reflections(Observed) 99.97
    R-Factor(Observed) 0.2379
    R-Work 0.2363
    R-Free 0.2682
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -3.826
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -3.826
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 7.6519
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6001
    Shell Resolution(Low) 2.8617
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2692
    R-Factor(R-Work) 0.3252
    R-Factor(R-Free) 0.4055
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8617
    Shell Resolution(Low) 3.2758
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2755
    R-Factor(R-Work) 0.2788
    R-Factor(R-Free) 0.3394
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2758
    Shell Resolution(Low) 4.1268
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2758
    R-Factor(R-Work) 0.2214
    R-Factor(R-Free) 0.2889
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1268
    Shell Resolution(Low) 48.1011
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2932
    R-Factor(R-Work) 0.2175
    R-Factor(R-Free) 0.2201
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.055
    f_dihedral_angle_d 19.503
    f_angle_d 0.79
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1338
    Nucleic Acid Atoms 0
    Heterogen Atoms 4
    Solvent Atoms 18
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALA version: 3.3.9
    data collection Mosflm version: 3.3.9