X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.2
Temperature 293.0
Details 1.5 M Ammonium Sulfate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 258.42 α = 90
b = 194.13 β = 108.82
c = 96.97 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV++ -- 2006-08-06
Diffraction Radiation
Monochromator Protocol
double crystal SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH3R 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.38 52.5 98.3 0.199 -- -- -- 62155 62155 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.4 3.52 -- 0.553 -- 2.1 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.38 52.5 -- 0.0 58823 58823 3161 98.18 0.19804 0.19804 0.19518 0.25169 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.382 3.469 4033 216 4033 0.245 0.322 -- 91.53
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 52.597
Anisotropic B[1][1] 2.17
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 5.87
Anisotropic B[2][2] -5.09
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 6.7
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.341
r_scbond_it 1.864
r_mcangle_it 1.237
r_mcbond_it 0.621
r_gen_planes_refined 0.007
r_chiral_restr 0.114
r_dihedral_angle_4_deg 26.741
r_dihedral_angle_3_deg 21.396
r_dihedral_angle_2_deg 37.318
r_dihedral_angle_1_deg 7.365
r_angle_refined_deg 1.92
r_bond_refined_d 0.018
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 15296
Nucleic Acid Atoms 0
Heterogen Atoms 192
Solvent Atoms 0

Software

Computing
Computing Package Purpose
d*TREK Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
Molrep Structure Solution
REFMAC 5.5.0102 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0102 refinement
Molrep model building
d*TREK data collection