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X-RAY DIFFRACTION
Materials and Methods page
4GMR
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Temperature 291.0
    Details 40% PEG 1000, 0.1M potassium nitrate, 0.1M HEPES, pH7.5, Microbatch crystallization under oil, 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 52.11 α = 90
    b = 43.59 β = 93.1
    c = 69.94 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2012-08-08
     
    Diffraction Radiation
    Monochromator Si 111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X4A
    Wavelength List 0.97904
    Site NSLS
    Beamline X4A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.38
    Resolution(Low) 50
    Number Reflections(All) 24545
    Number Reflections(Observed) 24422
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.138
    B(Isotropic) From Wilson Plot 32.67
    Redundancy 2.2
     
    High Resolution Shell Details
    Resolution(High) 2.4
    Resolution(Low) 2.49
    Percent Possible(All) 99.8
    R Merge I(Observed) 0.568
    Mean I Over Sigma(Observed) 1.4
    Redundancy 2.2
    Number Unique Reflections(All) 2465
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.377
    Resolution(Low) 42.852
    Cut-off Sigma(F) 1.2
    Number of Reflections(Observed) 24390
    Number of Reflections(R-Free) 1189
    Percent Reflections(Observed) 98.42
    R-Factor(Observed) 0.2
    R-Work 0.199
    R-Free 0.235
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 39.547
    Anisotropic B[1][1] 3.403
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -2.739
    Anisotropic B[2][2] -0.649
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.754
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.377
    Shell Resolution(Low) 2.485
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2731
    R-Factor(R-Work) 0.287
    R-Factor(R-Free) 0.342
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.485
    Shell Resolution(Low) 2.616
    Number of Reflections(R-Free) 204
    Number of Reflections(R-Work) 2883
    R-Factor(R-Work) 0.266
    R-Factor(R-Free) 0.304
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.616
    Shell Resolution(Low) 2.78
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2935
    R-Factor(R-Work) 0.253
    R-Factor(R-Free) 0.3
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.78
    Shell Resolution(Low) 2.994
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2931
    R-Factor(R-Work) 0.228
    R-Factor(R-Free) 0.276
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.994
    Shell Resolution(Low) 3.295
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2925
    R-Factor(R-Work) 0.223
    R-Factor(R-Free) 0.259
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.295
    Shell Resolution(Low) 3.772
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2921
    R-Factor(R-Work) 0.189
    R-Factor(R-Free) 0.243
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.772
    Shell Resolution(Low) 4.751
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2929
    R-Factor(R-Work) 0.148
    R-Factor(R-Free) 0.169
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.751
    Shell Resolution(Low) 42.859
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2946
    R-Factor(R-Work) 0.169
    R-Factor(R-Free) 0.176
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 16.632
    f_plane_restr 0.006
    f_chiral_restr 0.096
    f_angle_d 1.411
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2459
    Nucleic Acid Atoms 0
    Heterogen Atoms 4
    Solvent Atoms 48
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution MolRep
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    data extraction pdb_extract version: 3.100
    refinement phenix