X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Temperature 298.0
Details 0.04M sodium cacodylate buffer, 0.08M sodium chloride, 0.012M spermine tetra hydrochloride, 27% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 24.74 α = 90
b = 41.88 β = 90
c = 66.06 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M-F -- 2012-06-09
Diffraction Radiation
Monochromator Protocol
BARTELS MONOCHROMATOR SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA -- SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.72 41.92 97.9 0.024 0.015 -- 3.65 -- 7618 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.72 1.82 96.1 0.213 -- 6.94 3.75 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.72 41.9 -- 0.0 7618 -- 458 97.9 0.222 0.22 0.22 0.287 RANDOM
RMS Deviations
Key Refinement Restraint Deviation
s_approx_iso_adps 0.0
s_similar_adp_cmpnt 0.0274
s_rigid_bond_adp_cmpnt 0.0074
s_anti_bump_dis_restr 0.0077
s_non_zero_chiral_vol 0.007
s_zero_chiral_vol 0.0
s_from_restr_planes 0.0164
s_similar_dist 0.0
s_angle_d 0.03
s_bond_d 0.0085
Coordinate Error
Parameter Value
Number Disordered Residues 1.0
Occupancy Sum Hydrogen 0.0
Occupancy Sum Non Hydrogen 558.6
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 0
Nucleic Acid Atoms 488
Heterogen Atoms 0
Solvent Atoms 88

Software

Computing
Computing Package Purpose
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
PHASER Structure Solution
SHELXL-97 Structure Refinement
Software
Software Name Purpose
SHELXL-97 refinement
PHASER model building
RemDAq data collection