X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 71.11 α = 90
b = 154.75 β = 90
c = 185.01 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE PSI PILATUS 6M -- 2012-04-20
Diffraction Radiation
Monochromator Protocol
Kohzu HLD8-24 SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 0.97950 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.56 118.7 96.0 -- -- -- -- 25225 24216 0.0 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.557 118.699 -- 1.35 25225 24044 1204 95.1 -- 0.2782 0.2761 0.32 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.557 3.6994 -- 133 2548 0.3568 0.4334 -- 97.0
X Ray Diffraction 3.6994 3.8678 -- 133 2510 0.3274 0.3154 -- 96.0
X Ray Diffraction 3.8678 4.0718 -- 132 2486 0.3039 0.336 -- 95.0
X Ray Diffraction 4.0718 4.3269 -- 132 2521 0.2882 0.3683 -- 96.0
X Ray Diffraction 4.3269 4.661 -- 135 2548 0.252 0.3119 -- 96.0
X Ray Diffraction 4.661 5.13 -- 134 2545 0.2469 0.2981 -- 95.0
X Ray Diffraction 5.13 5.8723 -- 133 2523 0.2952 0.358 -- 94.0
X Ray Diffraction 5.8723 7.3984 -- 136 2571 0.2803 0.3142 -- 95.0
X Ray Diffraction 7.3984 118.765 -- 136 2588 0.2279 0.2495 -- 91.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.063
f_dihedral_angle_d 16.721
f_angle_d 1.273
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9651
Nucleic Acid Atoms 1020
Heterogen Atoms 64
Solvent Atoms 0

Software

Computing
Computing Package Purpose
APS in house software Data Collection
HKL-2000 Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASES Structure Solution
PHENIX (phenix.refine: 1.8_1069) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8_1069) refinement
PHASES model building
APS version: in house software data collection