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X-RAY DIFFRACTION
Materials and Methods page
4GJU
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 298.0
    Details 0.04M sodium cacodylate buffer, 0.08M NaCl, 0.02M MgCl2, 0.012M spermine tetra hydrochloride, 35% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 25.5 α = 90
    b = 40.4 β = 90
    c = 65.5 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 2M-F
    Collection Date 2012-06-09
     
    Diffraction Radiation
    Monochromator BARTELS MONOCHROMATOR
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength 1.00067
    Wavelength List 1.00067
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 4.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.41
    Resolution(Low) 40.4
    Number Reflections(All) 24635
    Number Reflections(Observed) 22852
    Percent Possible(Observed) 92.8
    Redundancy 3.61
     
    High Resolution Shell Details
    Resolution(High) 1.412
    Resolution(Low) 1.5
    Percent Possible(All) 97.1
    Mean I Over Sigma(Observed) 8.12
    Redundancy 3.72
    Number Unique Reflections(All) 3958
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.412
    Resolution(Low) 40.4
    Cut-off Sigma(I) 2.0
    Cut-off Sigma(F) 4.0
    Number of Reflections(all) 24635
    Number of Reflections(Observed) 22852
    Number of Reflections(R-Free) 1235
    Percent Reflections(Observed) 92.8
    R-Factor(All) 0.178
    R-Factor(Observed) 0.177
    R-Work 0.177
    R-Free 0.215
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Data Not Available
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    s_approx_iso_adps 0.0
    s_similar_adp_cmpnt 0.0262
    s_rigid_bond_adp_cmpnt 0.012
    s_anti_bump_dis_restr 0.0141
    s_non_zero_chiral_vol 0.0156
    s_zero_chiral_vol 0.0
    s_from_restr_planes 0.0636
    s_similar_dist 0.0
    s_angle_d 0.0388
    s_bond_d 0.0183
     
    Coordinate Error
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 488
    Heterogen Atoms 1
    Solvent Atoms 127
     
     
  •   Software and Computing Hide
    Computing
    Data Collection RemDAq
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHASER
    Structure Refinement SHELXL-97
     
    Software
    refinement SHELXL-97
    model building PHASER
    data collection RemDAq