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X-RAY DIFFRACTION
Materials and Methods page
4GJT
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    Temperature 277.0
    Details 0.1M Magnesium formate dehydrate, 15%(w/v) Polyethylene glycol 3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 82.35 α = 90
    b = 171.78 β = 90
    c = 117.44 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2012-04-20
     
    Diffraction Radiation
    Monochromator GRAPHITE
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRF BEAMLINE BL17U
    Wavelength List 0.97939
    Site SSRF
    Beamline BL17U
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 3.1
    Resolution(Low) 50
    Number Reflections(All) 15515
    Number Reflections(Observed) 15494
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.076
    Redundancy 6.9
     
    High Resolution Shell Details
    Resolution(High) 3.1
    Resolution(Low) 3.21
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.548
    Mean I Over Sigma(Observed) 3.522
    R-Sym I(Observed) 0.548
    Redundancy 7.0
    Number Unique Reflections(All) 1525
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.1001
    Resolution(Low) 37.129
    Cut-off Sigma(F) 1.35
    Number of Reflections(Observed) 15471
    Number of Reflections(R-Free) 774
    Percent Reflections(Observed) 99.9
    R-Factor(Observed) 0.2613
    R-Work 0.2604
    R-Free 0.2778
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -1.2708
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.2376
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0332
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1001
    Shell Resolution(Low) 3.2942
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2413
    R-Factor(R-Work) 0.3196
    R-Factor(R-Free) 0.3211
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2942
    Shell Resolution(Low) 3.5484
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2402
    R-Factor(R-Work) 0.2967
    R-Factor(R-Free) 0.3121
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5484
    Shell Resolution(Low) 3.9051
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2409
    R-Factor(R-Work) 0.2789
    R-Factor(R-Free) 0.3335
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9051
    Shell Resolution(Low) 4.4694
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2439
    R-Factor(R-Work) 0.2445
    R-Factor(R-Free) 0.2545
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4694
    Shell Resolution(Low) 5.6278
    Number of Reflections(R-Free) 109
    Number of Reflections(R-Work) 2492
    R-Factor(R-Work) 0.2194
    R-Factor(R-Free) 0.2621
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.6278
    Shell Resolution(Low) 37.1316
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2542
    R-Factor(R-Work) 0.2634
    R-Factor(R-Free) 0.2531
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.007
    f_chiral_restr 0.079
    f_dihedral_angle_d 19.454
    f_angle_d 1.08
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4927
    Nucleic Acid Atoms 0
    Heterogen Atoms 14
    Solvent Atoms 79
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Bluice
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building PHASER
    data collection Bluice