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X-RAY DIFFRACTION
Materials and Methods page
4GJG
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8
    Temperature 298.0
    Details cadmium sulphate octahydrate 0.02M, sodium acetate 0.6M, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 49.58 α = 90
    b = 49.58 β = 90
    c = 115.14 γ = 120
     
    Space Group
    Space Group Name:    P 61 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2011-07-21
     
    Diffraction Radiation
    Monochromator double crystal monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CLSI BEAMLINE 08ID-1
    Wavelength List 0.97949
    Site CLSI
    Beamline 08ID-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2
    Resolution(Low) 50
    Number Reflections(All) 6205
    Number Reflections(Observed) 6190
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.091
    Redundancy 9.2
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.07
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.409
    Redundancy 9.1
    Number Unique Reflections(All) 594
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 42.94
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 5820
    Number of Reflections(Observed) 6101
    Number of Reflections(R-Free) 281
    Percent Reflections(Observed) 99.06
    R-Factor(All) 0.146
    R-Factor(Observed) 0.146
    R-Work 0.1437
    R-Free 0.1978
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 38.6866
    Anisotropic B[1][1] 0.27
    Anisotropic B[1][2] 0.13
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.27
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.4
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.001
    Shell Resolution(Low) 2.053
    Number of Reflections(R-Free) 21
    Number of Reflections(R-Work) 418
    R-Factor(R-Work) 0.126
    R-Factor(R-Free) 0.195
    Percent Reflections(Observed) 98.21
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_rigid_bond_restr 2.999
    r_bond_refined_d 0.015
    r_angle_refined_deg 1.585
    r_dihedral_angle_1_deg 6.449
    r_dihedral_angle_2_deg 45.842
    r_dihedral_angle_3_deg 16.845
    r_dihedral_angle_4_deg 28.364
    r_chiral_restr 0.114
    r_gen_planes_refined 0.009
    r_mcbond_it 2.074
    r_mcangle_it 3.503
    r_scbond_it 5.687
    r_scangle_it 8.736
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 673
    Nucleic Acid Atoms 0
    Heterogen Atoms 20
    Solvent Atoms 34
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MxDC
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL
    Structure Solution Molrep
    Structure Refinement REFMAC 5.5.0109
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.5.0109
    data reduction HKL