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X-RAY DIFFRACTION
Materials and Methods page
4GIZ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 9.5
    Temperature 290.0
    Details 10% peg8000, pH 9.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 106.28 α = 90
    b = 134.94 β = 90
    c = 138.79 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type ADSC QUANTUM 315r
    Collection Date 2010-07-05
     
    Diffraction Radiation
    Monochromator DOUBLE CRYSTAL, SI(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength 0.9535
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.55
    Resolution(Low) 37.33
    Number Reflections(Observed) 65602
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.082
    B(Isotropic) From Wilson Plot 62.47
    Redundancy 7.2
     
    High Resolution Shell Details
    Resolution(High) 2.55
    Resolution(Low) 2.59
    Percent Possible(All) 99.1
    R Merge I(Observed) 0.537
    Mean I Over Sigma(Observed) 2.9
    R-Sym I(Observed) 0.537
    Redundancy 6.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.55
    Resolution(Low) 37.33
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 65687
    Number of Reflections(Observed) 65602
    Number of Reflections(R-Free) 3325
    Percent Reflections(Observed) 99.87
    R-Factor(Observed) 0.1677
    R-Work 0.1662
    R-Free 0.1957
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 52.7
    Anisotropic B[1][1] -15.1856
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 9.5904
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 5.5951
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.55
    Shell Resolution(Low) 2.62
    Number of Reflections(R-Free) 243
    Number of Reflections(R-Work) 4568
    R-Factor(R-Work) 0.2057
    R-Factor(R-Free) 0.2458
    Percent Reflections(Observed) 99.87
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.009
    t_angle_deg 1.06
     
    Coordinate Error
    Luzzati ESD(Observed) 0.295
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8282
    Nucleic Acid Atoms 0
    Heterogen Atoms 138
    Solvent Atoms 572
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement BUSTER 2.10.0
     
    Software
    refinement BUSTER version: 2.10.0
    model building PHASER
    data collection HKL-2000