X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 292.0
Details 0.1M Tris-HCl, 12%(w/v) PEG20000, 0.01M L-Cysteine, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 292K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 83.8 α = 90
b = 89.7 β = 90
c = 91.6 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MAR CCD 165 mm -- 2004-07-03
Diffraction Radiation
Monochromator Protocol
YALE MIRRORS SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE BM30A 0.9699 ESRF BM30A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 44.85 99.9 -- 0.113 -- 4.9 55036 55036 0.0 1.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.02 99.9 0.271 -- 5.4 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 44.85 -- 1.39 55017 55017 5580 99.9 -- 0.144 0.1399 0.1806 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.9216 -- 168 1638 0.1894 0.2414 -- 100.0
X Ray Diffraction 1.9216 1.9442 -- 201 1618 0.1657 0.203 -- 100.0
X Ray Diffraction 1.9442 1.9679 -- 192 1599 0.155 0.1974 -- 100.0
X Ray Diffraction 1.9679 1.9928 -- 191 1629 0.1499 0.1951 -- 100.0
X Ray Diffraction 1.9928 2.0191 -- 179 1615 0.1495 0.2095 -- 100.0
X Ray Diffraction 2.0191 2.0467 -- 179 1662 0.1508 0.1978 -- 100.0
X Ray Diffraction 2.0467 2.076 -- 196 1615 0.1501 0.193 -- 100.0
X Ray Diffraction 2.076 2.1069 -- 154 1638 0.1485 0.1925 -- 100.0
X Ray Diffraction 2.1069 2.1399 -- 201 1622 0.1368 0.1887 -- 100.0
X Ray Diffraction 2.1399 2.1749 -- 165 1648 0.14 0.1915 -- 100.0
X Ray Diffraction 2.1749 2.2124 -- 183 1630 0.1437 0.1831 -- 100.0
X Ray Diffraction 2.2124 2.2527 -- 194 1613 0.1451 0.2035 -- 100.0
X Ray Diffraction 2.2527 2.296 -- 170 1670 0.1408 0.2054 -- 100.0
X Ray Diffraction 2.296 2.3429 -- 201 1612 0.1338 0.1681 -- 100.0
X Ray Diffraction 2.3429 2.3938 -- 187 1636 0.1329 0.17 -- 100.0
X Ray Diffraction 2.3938 2.4495 -- 196 1619 0.1384 0.1937 -- 100.0
X Ray Diffraction 2.4495 2.5107 -- 191 1645 0.1294 0.1978 -- 100.0
X Ray Diffraction 2.5107 2.5786 -- 178 1622 0.1374 0.1764 -- 100.0
X Ray Diffraction 2.5786 2.6545 -- 176 1651 0.1353 0.1684 -- 100.0
X Ray Diffraction 2.6545 2.7402 -- 177 1655 0.1365 0.1737 -- 100.0
X Ray Diffraction 2.7402 2.8381 -- 200 1650 0.1419 0.1792 -- 100.0
X Ray Diffraction 2.8381 2.9517 -- 196 1628 0.1442 0.1945 -- 100.0
X Ray Diffraction 2.9517 3.086 -- 181 1665 0.146 0.1889 -- 100.0
X Ray Diffraction 3.086 3.2486 -- 205 1657 0.1436 0.196 -- 100.0
X Ray Diffraction 3.2486 3.4521 -- 172 1668 0.1389 0.1842 -- 100.0
X Ray Diffraction 3.4521 3.7185 -- 196 1649 0.1315 0.1486 -- 100.0
X Ray Diffraction 3.7185 4.0925 -- 159 1708 0.1219 0.1595 -- 100.0
X Ray Diffraction 4.0925 4.6842 -- 191 1690 0.1155 0.1519 -- 100.0
X Ray Diffraction 4.6842 5.8994 -- 204 1704 0.1314 0.1616 -- 100.0
X Ray Diffraction 5.8994 44.8625 -- 197 1781 0.168 0.1791 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.085
f_dihedral_angle_d 12.743
f_angle_d 1.095
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4453
Nucleic Acid Atoms 0
Heterogen Atoms 25
Solvent Atoms 716

Software

Computing
Computing Package Purpose
ADSC Quantum Data Collection
XDS Data Reduction (intensity integration)
XSCALE Data Reduction (data scaling)
AMoRE Structure Solution
PHENIX (phenix.refine: 1.8_1069) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8_1069) refinement
AMoRE model building
ADSC version: Quantum data collection