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An Information Portal to 109822 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4GID
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 290.0
    Details 12% PEG 8000, NA CACODYLATE BUFFER, 15MG/ML PROTEIN CONCENTRATION, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.43 α = 90
    b = 130.35 β = 97.5
    c = 88.4 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU RAXIS HTC
    Details VariMax HR optic
    Collection Date 2010-08-24
     
    Diffraction Radiation
    Monochromator VariMax HR optic
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2
    Resolution(Low) 50
    Number Reflections(All) 130808
    Number Reflections(Observed) 130546
    Percent Possible(Observed) 99.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.0
    Resolution(Low) 34.49
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 130745
    Number of Reflections(Observed) 124360
    Number of Reflections(R-Free) 8766
    Percent Reflections(Observed) 95.1
    R-Factor(Observed) 0.2156
    R-Work 0.2156
    R-Free 0.2519
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Isotropic Thermal Model Isotropic
    Mean Isotropic B Value 28.8
    Anisotropic B[1][1] 5.182
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 3.62
    Anisotropic B[2][2] 8.446
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -13.628
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_mcangle_it 1.36
    c_mcbond_it 0.778
    c_angle_d 1.751
    c_angle_deg 0.011985
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 12178
    Nucleic Acid Atoms 0
    Heterogen Atoms 220
    Solvent Atoms 1219
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CrystalClear
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution AMoRE
    Structure Refinement CNS 1.1
     
    Software
    refinement CNS version: 1.1
    model building AMoRE
    data collection CrystalClear