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X-RAY DIFFRACTION
Materials and Methods page
4GHI
  •   Crystallization Hide
    Crystallization Experiments
    pH 6
    Temperature 293.0
    Details 20% PEG400 50 mM BisTris, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 73.35 α = 90
    b = 83 β = 105.98
    c = 41.02 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2010-08-16
     
    Diffraction Radiation
    Monochromator CUSTOM
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-ID
    Wavelength 0.97937
    Site APS
    Beamline 19-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.5
    Resolution(Low) 50
    Number Reflections(Observed) 37413
    Percent Possible(Observed) 99.0
    R Merge I(Observed) 0.041
    Redundancy 4.7
     
    High Resolution Shell Details
    Resolution(High) 1.5
    Resolution(Low) 1.53
    Percent Possible(All) 89.9
    R Merge I(Observed) 0.408
    Mean I Over Sigma(Observed) 2.0
    Redundancy 3.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.5
    Resolution(Low) 29.02
    Cut-off Sigma(F) 1.36
    Number of Reflections(all) 37413
    Number of Reflections(Observed) 37409
    Number of Reflections(R-Free) 1880
    Percent Reflections(Observed) 98.9
    R-Factor(Observed) 0.17
    R-Work 0.169
    R-Free 0.196
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 2.6947
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.9053
    Anisotropic B[2][2] -1.9307
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.764
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5
    Shell Resolution(Low) 1.5397
    Number of Reflections(R-Free) 112
    Number of Reflections(R-Work) 2467
    R-Factor(R-Work) 0.2584
    R-Factor(R-Free) 0.3067
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5397
    Shell Resolution(Low) 1.585
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2703
    R-Factor(R-Work) 0.2173
    R-Factor(R-Free) 0.2709
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.585
    Shell Resolution(Low) 1.6361
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2762
    R-Factor(R-Work) 0.2038
    R-Factor(R-Free) 0.2412
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6361
    Shell Resolution(Low) 1.6946
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2733
    R-Factor(R-Work) 0.1809
    R-Factor(R-Free) 0.226
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6946
    Shell Resolution(Low) 1.7624
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 2732
    R-Factor(R-Work) 0.1691
    R-Factor(R-Free) 0.22
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7624
    Shell Resolution(Low) 1.8426
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2774
    R-Factor(R-Work) 0.1674
    R-Factor(R-Free) 0.2064
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8426
    Shell Resolution(Low) 1.9398
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2719
    R-Factor(R-Work) 0.163
    R-Factor(R-Free) 0.2091
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9398
    Shell Resolution(Low) 2.0613
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2772
    R-Factor(R-Work) 0.1573
    R-Factor(R-Free) 0.1633
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0613
    Shell Resolution(Low) 2.2204
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2765
    R-Factor(R-Work) 0.1542
    R-Factor(R-Free) 0.1783
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2204
    Shell Resolution(Low) 2.4437
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2799
    R-Factor(R-Work) 0.1582
    R-Factor(R-Free) 0.1814
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4437
    Shell Resolution(Low) 2.7971
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2733
    R-Factor(R-Work) 0.1664
    R-Factor(R-Free) 0.1938
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7971
    Shell Resolution(Low) 3.523
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.1628
    R-Factor(R-Free) 0.1773
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.523
    Shell Resolution(Low) 29.0271
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2807
    R-Factor(R-Work) 0.17
    R-Factor(R-Free) 0.1992
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.078
    f_dihedral_angle_d 15.859
    f_angle_d 1.312
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1782
    Nucleic Acid Atoms 0
    Heterogen Atoms 21
    Solvent Atoms 184
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (PHENIX.REFINE: 1.7.2_869)
    Structure Refinement PHENIX (PHENIX.REFINE: 1.7.2_869)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.2_869)
    model building PHENIX version: (phenix.refine: 1.7.2_869)
    data collection HKL-3000