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X-RAY DIFFRACTION
Materials and Methods page
4GET
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION
    pH 8.2
    Temperature 298.0
    Details 28-30% PEG 6000, 0.1 M Tris, pH 8.2, VAPOR DIFFUSION, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 68.73 α = 90
    b = 72.33 β = 90.04
    c = 79.49 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2008-04-14
     
    Diffraction Radiation
    Monochromator Si-111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-BM
    Wavelength List 1.000
    Site APS
    Beamline 22-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.24
    Resolution(Low) 50
    Number Reflections(Observed) 37060
    Percent Possible(Observed) 99.2
    R Merge I(Observed) 0.081
    Redundancy 5.6
     
    High Resolution Shell Details
    Resolution(High) 2.24
    Resolution(Low) 2.33
    Percent Possible(All) 94.1
    R Merge I(Observed) 0.363
    Redundancy 4.6
    Number Unique Reflections(All) 3541
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.24
    Resolution(Low) 32.919
    Cut-off Sigma(F) 1.38
    Number of Reflections(all) 37046
    Number of Reflections(Observed) 37034
    Number of Reflections(R-Free) 1847
    Percent Reflections(Observed) 98.89
    R-Factor(Observed) 0.188
    R-Work 0.1846
    R-Free 0.2544
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 37.4419
    Anisotropic B[1][1] -2.6269
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -1.6557
    Anisotropic B[2][2] 2.3292
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.2977
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.24
    Shell Resolution(Low) 2.3053
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2443
    R-Factor(R-Work) 0.2327
    R-Factor(R-Free) 0.3135
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3053
    Shell Resolution(Low) 2.3731
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2653
    R-Factor(R-Work) 0.2303
    R-Factor(R-Free) 0.3501
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3731
    Shell Resolution(Low) 2.4497
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2697
    R-Factor(R-Work) 0.2351
    R-Factor(R-Free) 0.3286
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4497
    Shell Resolution(Low) 2.5372
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2690
    R-Factor(R-Work) 0.2296
    R-Factor(R-Free) 0.3006
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5372
    Shell Resolution(Low) 2.6387
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2701
    R-Factor(R-Work) 0.2233
    R-Factor(R-Free) 0.3433
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6387
    Shell Resolution(Low) 2.7588
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2746
    R-Factor(R-Work) 0.214
    R-Factor(R-Free) 0.3136
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7588
    Shell Resolution(Low) 2.9041
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2718
    R-Factor(R-Work) 0.2034
    R-Factor(R-Free) 0.2622
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9041
    Shell Resolution(Low) 3.086
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2718
    R-Factor(R-Work) 0.197
    R-Factor(R-Free) 0.3099
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.086
    Shell Resolution(Low) 3.324
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2735
    R-Factor(R-Work) 0.1924
    R-Factor(R-Free) 0.2677
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.324
    Shell Resolution(Low) 3.6582
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2751
    R-Factor(R-Work) 0.1934
    R-Factor(R-Free) 0.2572
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6582
    Shell Resolution(Low) 4.1866
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2751
    R-Factor(R-Work) 0.156
    R-Factor(R-Free) 0.2122
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1866
    Shell Resolution(Low) 5.2711
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2787
    R-Factor(R-Work) 0.1334
    R-Factor(R-Free) 0.18
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.2711
    Shell Resolution(Low) 32.9222
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2797
    R-Factor(R-Work) 0.1686
    R-Factor(R-Free) 0.2032
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.576
    f_plane_restr 0.003
    f_chiral_restr 0.073
    f_angle_d 0.919
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6180
    Nucleic Acid Atoms 0
    Heterogen Atoms 32
    Solvent Atoms 375
     
     
  •   Software and Computing Hide
    Computing
    Data Collection In house software
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) HKL
    Structure Solution Phaser
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL