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X-RAY DIFFRACTION
Materials and Methods page
4GEE
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.6
    Temperature 293.0
    Details 25% (w/v) PEG 1500, 3% (v/v) t-butanol, 20% (w/v) glycerol, 20 mM citrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 5.6
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 54.93 α = 90
    b = 58.08 β = 90
    c = 66.25 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type NOIR-1
    Collection Date 2010-08-01
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 4.2.2
    Site ALS
    Beamline 4.2.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.7
    Resolution(Low) 34.19
    Number Reflections(All) 23876
    Number Reflections(Observed) 23876
    Percent Possible(Observed) 98.9
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.79
    Percent Possible(All) 98.9
    R Merge I(Observed) 0.454
    Mean I Over Sigma(Observed) 3.4
    R-Sym I(Observed) 0.385
    Redundancy 3.5
    Number Unique Reflections(All) 3181
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 34.19
    Number of Reflections(all) 23876
    Number of Reflections(Observed) 22609
    Number of Reflections(R-Free) 1221
    Percent Reflections(Observed) 99.52
    R-Factor(All) 0.17356
    R-Factor(Observed) 0.17356
    R-Work 0.17145
    R-Free 0.21465
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 19.315
    Anisotropic B[1][1] -0.08
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.22
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.3
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7
    Shell Resolution(Low) 1.744
    Number of Reflections(R-Free) 84
    Number of Reflections(R-Work) 1416
    R-Factor(R-Work) 0.264
    R-Factor(R-Free) 0.323
    Percent Reflections(Observed) 94.16
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.005
    r_chiral_restr 0.071
    r_dihedral_angle_4_deg 11.113
    r_dihedral_angle_3_deg 10.254
    r_dihedral_angle_2_deg 32.127
    r_dihedral_angle_1_deg 5.114
    r_angle_refined_deg 1.248
    r_bond_refined_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1524
    Nucleic Acid Atoms 0
    Heterogen Atoms 32
    Solvent Atoms 227
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117