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X-RAY DIFFRACTION
Materials and Methods page
4GBX
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 291.0
    Details 0.1M MES, 6% PEG 20000, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 6.5
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 66.17 α = 90
    b = 126.03 β = 90
    c = 143.11 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type ADSC QUANTUM 315
    Collection Date 2012-04-19
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.978
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 1.5
    Resolution(High) 2.9
    Resolution(Low) 40
    Number Reflections(All) 27300
    Number Reflections(Observed) 27191
    Percent Possible(Observed) 99.6
    R Merge I(Observed) 0.07
    Redundancy 3.6
     
    High Resolution Shell Details
    Resolution(High) 2.9
    Resolution(Low) 3.0
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.875
    Redundancy 3.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0
    Resolution(Low) 36.991
    Cut-off Sigma(F) 1.36
    Number of Reflections(all) 27300
    Number of Reflections(Observed) 24550
    Number of Reflections(R-Free) 1227
    Percent Reflections(Observed) 99.57
    R-Factor(Observed) 0.2004
    R-Work 0.1979
    R-Free 0.2504
     
    Temperature Factor Modeling
    Mean Isotropic B Value 70.3169
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0001
    Shell Resolution(Low) 3.1201
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2517
    R-Factor(R-Work) 0.3113
    R-Factor(R-Free) 0.3513
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1201
    Shell Resolution(Low) 3.2621
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2563
    R-Factor(R-Work) 0.2667
    R-Factor(R-Free) 0.2862
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2621
    Shell Resolution(Low) 3.4339
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2562
    R-Factor(R-Work) 0.2229
    R-Factor(R-Free) 0.2897
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4339
    Shell Resolution(Low) 3.6489
    Number of Reflections(R-Free) 106
    Number of Reflections(R-Work) 2594
    R-Factor(R-Work) 0.2036
    R-Factor(R-Free) 0.2963
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6489
    Shell Resolution(Low) 3.9303
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2578
    R-Factor(R-Work) 0.2101
    R-Factor(R-Free) 0.2789
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9303
    Shell Resolution(Low) 4.3253
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2593
    R-Factor(R-Work) 0.1772
    R-Factor(R-Free) 0.2291
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3253
    Shell Resolution(Low) 4.9499
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2609
    R-Factor(R-Work) 0.1492
    R-Factor(R-Free) 0.197
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.9499
    Shell Resolution(Low) 6.2315
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2616
    R-Factor(R-Work) 0.1906
    R-Factor(R-Free) 0.2338
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.2315
    Shell Resolution(Low) 36.9936
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2691
    R-Factor(R-Work) 0.203
    R-Factor(R-Free) 0.2508
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.007
    f_chiral_restr 0.087
    f_dihedral_angle_d 16.83
    f_angle_d 1.295
    f_bond_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6088
    Nucleic Acid Atoms 0
    Heterogen Atoms 42
    Solvent Atoms 56
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8_1065)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    molecular replacement Phaser
    data reduction SCALEPACK