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X-RAY DIFFRACTION
Materials and Methods page
4G9E
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 25% PEG8000, 0.2M ammonium acetate, 0.01M magnesium acetate, 0.05M sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.16 α = 90
    b = 129.52 β = 111
    c = 44.31 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 180
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2011-06-22
     
    Diffraction Radiation
    Monochromator GRAPHITE
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRF BEAMLINE BL17U
    Wavelength List 0.9
    Site SSRF
    Beamline BL17U
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 3.0
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 1.09
    Resolution(Low) 21.29
    Number Reflections(Observed) 179801
    Percent Possible(Observed) 52.1
    B(Isotropic) From Wilson Plot 7.83
     
    High Resolution Shell Details
    Resolution(High) 1.09
    Resolution(Low) 1.12
    Percent Possible(All) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.088
    Resolution(Low) 21.29
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 179678
    Number of Reflections(R-Free) 8930
    Percent Reflections(Observed) 97.33
    R-Factor(All) 0.15
    R-Factor(Observed) 0.1285
    R-Work 0.1273
    R-Free 0.1517
     
    Temperature Factor Modeling
    Mean Isotropic B Value 15.5626
    Anisotropic B[1][1] 2.5727
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.012
    Anisotropic B[2][2] -2.7408
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.5636
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.0884
    Shell Resolution(Low) 1.1273
    Number of Reflections(R-Free) 809
    Number of Reflections(R-Work) 16317
    R-Factor(R-Work) 0.2232
    R-Factor(R-Free) 0.2423
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.1273
    Shell Resolution(Low) 1.1725
    Number of Reflections(R-Free) 903
    Number of Reflections(R-Work) 16947
    R-Factor(R-Work) 0.1661
    R-Factor(R-Free) 0.1853
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.1725
    Shell Resolution(Low) 1.2258
    Number of Reflections(R-Free) 910
    Number of Reflections(R-Work) 16990
    R-Factor(R-Work) 0.1339
    R-Factor(R-Free) 0.162
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2258
    Shell Resolution(Low) 1.2904
    Number of Reflections(R-Free) 855
    Number of Reflections(R-Work) 17134
    R-Factor(R-Work) 0.1166
    R-Factor(R-Free) 0.1428
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2904
    Shell Resolution(Low) 1.3713
    Number of Reflections(R-Free) 925
    Number of Reflections(R-Work) 17176
    R-Factor(R-Work) 0.111
    R-Factor(R-Free) 0.1474
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3713
    Shell Resolution(Low) 1.4771
    Number of Reflections(R-Free) 901
    Number of Reflections(R-Work) 17313
    R-Factor(R-Work) 0.1058
    R-Factor(R-Free) 0.1409
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4771
    Shell Resolution(Low) 1.6257
    Number of Reflections(R-Free) 939
    Number of Reflections(R-Work) 17389
    R-Factor(R-Work) 0.1016
    R-Factor(R-Free) 0.1259
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6257
    Shell Resolution(Low) 1.8609
    Number of Reflections(R-Free) 928
    Number of Reflections(R-Work) 17457
    R-Factor(R-Work) 0.1114
    R-Factor(R-Free) 0.1448
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8609
    Shell Resolution(Low) 2.344
    Number of Reflections(R-Free) 902
    Number of Reflections(R-Work) 17436
    R-Factor(R-Work) 0.1211
    R-Factor(R-Free) 0.1467
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.344
    Shell Resolution(Low) 21.294
    Number of Reflections(R-Free) 858
    Number of Reflections(R-Work) 16589
    R-Factor(R-Work) 0.1374
    R-Factor(R-Free) 0.1536
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.031
    f_plane_restr 0.005
    f_chiral_restr 0.073
    f_angle_d 1.049
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4216
    Nucleic Acid Atoms 0
    Heterogen Atoms 26
    Solvent Atoms 937
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.4_486)
    model building PHENIX
    data collection ADSC version: Quantum