X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.8
Temperature 277.0
Details PEG 8000, AMMONIUM SULFATE, MGCL2,IMIDAZOLE, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 277K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 162.71 α = 90
b = 72.52 β = 100.84
c = 109.51 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR ADSC QUANTUM 315 -- 2009-10-12
Diffraction Radiation
Monochromator Protocol
Si 111 CHANNEL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X29A 1.0 NSLS X29A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.5 50 96.9 0.055 -- -- 6.2 -- 193097 0.0 -1.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.5 1.53 93.3 0.797 -- 1.6 4.0 9311

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.51 35.853 -- 1.35 195940 190062 3833 97.0 0.155 0.155 0.1542 0.1932 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.51 1.5291 -- 147 6600 0.3027 0.3573 -- 94.0
X Ray Diffraction 1.5291 1.5492 -- 140 6648 0.2727 0.3184 -- 94.0
X Ray Diffraction 1.5492 1.5705 -- 145 6735 0.2462 0.2856 -- 95.0
X Ray Diffraction 1.5705 1.5929 -- 157 6728 0.222 0.2567 -- 95.0
X Ray Diffraction 1.5929 1.6167 -- 124 6747 0.2031 0.2581 -- 95.0
X Ray Diffraction 1.6167 1.6419 -- 116 6770 0.1899 0.2383 -- 95.0
X Ray Diffraction 1.6419 1.6689 -- 131 6727 0.1747 0.2543 -- 96.0
X Ray Diffraction 1.6689 1.6976 -- 142 6784 0.1584 0.2324 -- 95.0
X Ray Diffraction 1.6976 1.7285 -- 146 6720 0.1422 0.1847 -- 95.0
X Ray Diffraction 1.7285 1.7617 -- 138 6762 0.134 0.1844 -- 96.0
X Ray Diffraction 1.7617 1.7977 -- 123 6781 0.1276 0.212 -- 95.0
X Ray Diffraction 1.7977 1.8368 -- 135 6806 0.1189 0.1644 -- 96.0
X Ray Diffraction 1.8368 1.8795 -- 142 6751 0.1118 0.1625 -- 96.0
X Ray Diffraction 1.8795 1.9265 -- 149 6784 0.1082 0.1588 -- 96.0
X Ray Diffraction 1.9265 1.9786 -- 119 6847 0.1108 0.1829 -- 96.0
X Ray Diffraction 1.9786 2.0368 -- 150 6904 0.1155 0.1568 -- 97.0
X Ray Diffraction 2.0368 2.1026 -- 137 6976 0.1155 0.1454 -- 99.0
X Ray Diffraction 2.1026 2.1777 -- 158 7067 0.1186 0.1685 -- 99.0
X Ray Diffraction 2.1777 2.2649 -- 133 7117 0.1191 0.1773 -- 100.0
X Ray Diffraction 2.2649 2.3679 -- 148 7059 0.1245 0.1659 -- 100.0
X Ray Diffraction 2.3679 2.4927 -- 145 7134 0.1315 0.1868 -- 100.0
X Ray Diffraction 2.4927 2.6489 -- 150 7093 0.1391 0.2006 -- 100.0
X Ray Diffraction 2.6489 2.8533 -- 166 7109 0.1468 0.1645 -- 100.0
X Ray Diffraction 2.8533 3.1403 -- 151 7168 0.1514 0.1768 -- 100.0
X Ray Diffraction 3.1403 3.5944 -- 148 7136 0.1604 0.1865 -- 100.0
X Ray Diffraction 3.5944 4.5271 -- 151 7159 0.1539 0.1872 -- 99.0
X Ray Diffraction 4.5271 35.863 -- 142 7117 0.2005 0.2369 -- 97.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 1.0783
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -3.2985
Anisotropic B[2][2] -2.3632
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.2848
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.008
f_chiral_restr 0.08
f_dihedral_angle_d 14.162
f_angle_d 1.362
f_bond_d 0.013
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7955
Nucleic Acid Atoms 0
Heterogen Atoms 79
Solvent Atoms 824

Software

Computing
Computing Package Purpose
ADSC Quantum Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
phenix Structure Solution
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement
phenix model building
ADSC version: Quantum data collection