X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 60.44 α = 90
b = 60.44 β = 90
c = 102.24 γ = 90
Symmetry
Space Group P 41 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2010-10-18
Diffraction Radiation
Monochromator Protocol
DOUBLE FLAT CRYSTAL, SI(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.3.1 1.115889 ALS 8.3.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 30.22 -- -- -- -- -- -- 17711 -- -- 27.14

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 30.22 -- 0.0 -- 17187 1716 94.3 -- 0.216 0.212 0.251 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.865 -- 133 1197 0.2945 0.3241 -- 75.0
X Ray Diffraction 1.865 1.9397 -- 159 1411 0.2541 0.2945 -- 88.0
X Ray Diffraction 1.9397 2.0279 -- 160 1477 0.2345 0.291 -- 92.0
X Ray Diffraction 2.0279 2.1348 -- 168 1535 0.2292 0.2729 -- 95.0
X Ray Diffraction 2.1348 2.2685 -- 174 1571 0.2241 0.293 -- 98.0
X Ray Diffraction 2.2685 2.4436 -- 180 1589 0.2191 0.264 -- 98.0
X Ray Diffraction 2.4436 2.6894 -- 179 1622 0.2291 0.3073 -- 99.0
X Ray Diffraction 2.6894 3.0782 -- 182 1642 0.2373 0.2761 -- 100.0
X Ray Diffraction 3.0782 3.877 -- 185 1668 0.2015 0.2372 -- 100.0
X Ray Diffraction 3.877 30.22 -- 196 1759 0.1827 0.2003 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 31.98
Anisotropic B[1][1] -5.1735
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -5.1735
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 10.347
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.07
f_dihedral_angle_d 11.595
f_angle_d 1.088
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1364
Nucleic Acid Atoms 0
Heterogen Atoms 1
Solvent Atoms 91

Software

Computing
Computing Package Purpose
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
PHENIX (PHENIX.REFINE: 1.6.4_486) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE: 1.6.4_486) refinement