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X-RAY DIFFRACTION
Materials and Methods page
4G0V
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.8
    Temperature 277.0
    Details 100mM magnesium acetate, 50mM 2-(N-morpholino)ethanesulfonic acid pH 5.8, 22% 2-methyl-2,4-pentanediol (MPD), VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 80.55 α = 90
    b = 176.61 β = 111.53
    c = 93.76 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX300HE
    Collection Date 2010-12-25
     
    Diffraction Radiation
    Monochromator HORIZONTALLY FOCUSING SINGLE CRYSTAL MONOCHROMATOR (CRYSTAL TYPE SI(1 1 1))
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSRRC BEAMLINE BL13C1
    Wavelength List 0.97622
    Site NSRRC
    Beamline BL13C1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.55
    Resolution(Low) 30
    Number Reflections(All) 79306
    Number Reflections(Observed) 78830
    Percent Possible(Observed) 99.4
    B(Isotropic) From Wilson Plot 42.58
    Redundancy 3.6
     
    High Resolution Shell Details
    Resolution(High) 2.55
    Resolution(Low) 2.59
    Percent Possible(All) 97.3
    R Merge I(Observed) 0.49
    Mean I Over Sigma(Observed) 2.5
    R-Sym I(Observed) 0.49
    Redundancy 3.5
    Number Unique Reflections(All) 3892
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.548
    Resolution(Low) 27.941
    Cut-off Sigma(F) 1.35
    Number of Reflections(all) 79376
    Number of Reflections(Observed) 78789
    Number of Reflections(R-Free) 3956
    Percent Reflections(Observed) 99.26
    R-Factor(All) 0.1631
    R-Factor(Observed) 0.1631
    R-Work 0.1608
    R-Free 0.206
    R-Free Selection Details Randomly picked by PHENIX program
     
    Temperature Factor Modeling
    Mean Isotropic B Value 33.3113
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5475
    Shell Resolution(Low) 2.6384
    Number of Reflections(R-Free) 355
    Number of Reflections(R-Work) 7252
    R-Factor(R-Work) 0.2198
    R-Factor(R-Free) 0.2855
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6384
    Shell Resolution(Low) 2.744
    Number of Reflections(R-Free) 426
    Number of Reflections(R-Work) 7384
    R-Factor(R-Work) 0.2062
    R-Factor(R-Free) 0.288
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.744
    Shell Resolution(Low) 2.8687
    Number of Reflections(R-Free) 398
    Number of Reflections(R-Work) 7416
    R-Factor(R-Work) 0.1977
    R-Factor(R-Free) 0.2627
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8687
    Shell Resolution(Low) 3.0198
    Number of Reflections(R-Free) 373
    Number of Reflections(R-Work) 7522
    R-Factor(R-Work) 0.1903
    R-Factor(R-Free) 0.2566
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0198
    Shell Resolution(Low) 3.2088
    Number of Reflections(R-Free) 376
    Number of Reflections(R-Work) 7545
    R-Factor(R-Work) 0.1746
    R-Factor(R-Free) 0.2344
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2088
    Shell Resolution(Low) 3.4561
    Number of Reflections(R-Free) 392
    Number of Reflections(R-Work) 7527
    R-Factor(R-Work) 0.1581
    R-Factor(R-Free) 0.2091
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4561
    Shell Resolution(Low) 3.8031
    Number of Reflections(R-Free) 427
    Number of Reflections(R-Work) 7513
    R-Factor(R-Work) 0.1474
    R-Factor(R-Free) 0.1927
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8031
    Shell Resolution(Low) 4.3517
    Number of Reflections(R-Free) 396
    Number of Reflections(R-Work) 7510
    R-Factor(R-Work) 0.1365
    R-Factor(R-Free) 0.1712
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3517
    Shell Resolution(Low) 5.4759
    Number of Reflections(R-Free) 407
    Number of Reflections(R-Work) 7581
    R-Factor(R-Work) 0.141
    R-Factor(R-Free) 0.1912
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4759
    Shell Resolution(Low) 27.9431
    Number of Reflections(R-Free) 406
    Number of Reflections(R-Work) 7583
    R-Factor(R-Work) 0.1605
    R-Factor(R-Free) 0.1763
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.072
    f_dihedral_angle_d 16.507
    f_angle_d 1.122
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10722
    Nucleic Acid Atoms 820
    Heterogen Atoms 70
    Solvent Atoms 559
     
     
  •   Software and Computing Hide
    Computing
    Data Collection bluice
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.automr: 1.6.4_486)
    Structure Refinement PHENIX (phenix.refine: 1.8_1069)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8_1069)
    model building PHENIX version: (phenix.automr: 1.6.4_486)
    data collection bluice