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An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4FYK
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.38 α = 90
    b = 128.77 β = 90
    c = 57.51 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2011-03-11
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength List 0.97625
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.79
    Resolution(Low) 35.9
    Number Reflections(All) 61110
    Number Reflections(Observed) 56650
    Percent Possible(Observed) 92.7
    Redundancy 3.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.79
    Resolution(Low) 35.9
    Number of Reflections(all) 61110
    Number of Reflections(Observed) 53716
    Number of Reflections(R-Free) 2882
    Percent Reflections(Observed) 92.42
    R-Factor(Observed) 0.1951
    R-Work 0.19366
    R-Free 0.22172
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 13.287
    Anisotropic B[1][1] 1.13
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.13
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.79
    Shell Resolution(Low) 1.836
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2668
    R-Factor(R-Work) 0.264
    R-Factor(R-Free) 0.329
    Percent Reflections(Observed) 63.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.382
    r_scbond_it 1.487
    r_mcangle_it 1.04
    r_mcbond_other 0.132
    r_mcbond_it 0.559
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.004
    r_chiral_restr 0.244
    r_dihedral_angle_4_deg 17.88
    r_dihedral_angle_3_deg 14.389
    r_dihedral_angle_2_deg 32.535
    r_dihedral_angle_1_deg 5.054
    r_angle_other_deg 1.257
    r_angle_refined_deg 1.189
    r_bond_other_d 0.004
    r_bond_refined_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3942
    Nucleic Acid Atoms 0
    Heterogen Atoms 107
    Solvent Atoms 626
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Pilatus
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution MolRep
    Structure Refinement REFMAC 5.5.0102
     
    Software
    refinement REFMAC version: 5.5.0102
    model building MolRep
    data collection Pilatus