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X-RAY DIFFRACTION
Materials and Methods page
4FYJ
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details PEG 4000 isopropanol, pH 7.5, sitting-drop vapor diffusion, temperature 100K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 63.62 α = 90
    b = 63.62 β = 90
    c = 155.2 γ = 120
     
    Space Group
    Space Group Name:    P 61 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR scanner 345 mm plate
    Collection Date 2012-01-01
     
    Diffraction Radiation
    Monochromator GRAPHITE
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 14-BM-C
    Wavelength List 0.97
    Site APS
    Beamline 14-BM-C
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.77
    Resolution(Low) 50
    Number Reflections(Observed) 18791
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.045
    Redundancy 11.0
     
    High Resolution Shell Details
    Resolution(High) 1.77
    Resolution(Low) 1.83
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.258
    Redundancy 11.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.77
    Resolution(Low) 31.809
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 18783
    Number of Reflections(R-Free) 939
    Percent Reflections(Observed) 99.21
    R-Factor(Observed) 0.193
    R-Work 0.1908
    R-Free 0.2346
     
    Temperature Factor Modeling
    Isotropic Thermal Model mixed isotropic/anisotropic
    Anisotropic B[1][1] 1.928
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.928
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -3.8561
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7699
    Shell Resolution(Low) 1.8632
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2463
    R-Factor(R-Work) 0.2433
    R-Factor(R-Free) 0.3277
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8632
    Shell Resolution(Low) 1.9799
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2476
    R-Factor(R-Work) 0.2065
    R-Factor(R-Free) 0.2232
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9799
    Shell Resolution(Low) 2.1327
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2496
    R-Factor(R-Work) 0.202
    R-Factor(R-Free) 0.2445
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1327
    Shell Resolution(Low) 2.3473
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2522
    R-Factor(R-Work) 0.2009
    R-Factor(R-Free) 0.2708
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3473
    Shell Resolution(Low) 2.6868
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2542
    R-Factor(R-Work) 0.2033
    R-Factor(R-Free) 0.2724
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6868
    Shell Resolution(Low) 3.3845
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2596
    R-Factor(R-Work) 0.183
    R-Factor(R-Free) 0.201
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3845
    Shell Resolution(Low) 31.8146
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2749
    R-Factor(R-Work) 0.1731
    R-Factor(R-Free) 0.2114
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.04
    f_dihedral_angle_d 12.328
    f_angle_d 0.673
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1463
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 310
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    molecular replacement Phaser
    data reduction SCALEPACK
    data collection DENZO