X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Microbatch
Temperature 291.0
Details 0.2M MgAc2, 10% PEG8000, microbatch, temperature 291K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 111.69 α = 90
b = 145.69 β = 90
c = 197.2 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2011-01-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 DIAMOND I02

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.1 49.39 99.7 0.105 0.105 -- 7.2 59154 59154 0.0 0.0 97.34
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.1 3.26 98.4 0.974 0.974 2.1 7.3 8380

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.1 48.801 -- 0.0 59154 59154 5699 99.21 -- 0.2116 0.2098 0.2467 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.1 3.1322 -- 199 3358 0.3849 0.4081 -- 95.0
X Ray Diffraction 3.1322 3.169 -- 185 3561 0.3588 0.4015 -- 99.0
X Ray Diffraction 3.169 3.2077 -- 183 3576 0.3335 0.371 -- 100.0
X Ray Diffraction 3.2077 3.2483 -- 221 3504 0.325 0.3472 -- 99.0
X Ray Diffraction 3.2483 3.291 -- 196 3587 0.3047 0.3074 -- 100.0
X Ray Diffraction 3.291 3.3361 -- 180 3519 0.2919 0.3305 -- 99.0
X Ray Diffraction 3.3361 3.3837 -- 187 3635 0.2736 0.3373 -- 99.0
X Ray Diffraction 3.3837 3.4342 -- 169 3491 0.2776 0.3237 -- 100.0
X Ray Diffraction 3.4342 3.4879 -- 178 3604 0.2638 0.2796 -- 99.0
X Ray Diffraction 3.4879 3.545 -- 234 3556 0.2508 0.3466 -- 99.0
X Ray Diffraction 3.545 3.6061 -- 168 3571 0.2493 0.2915 -- 100.0
X Ray Diffraction 3.6061 3.6717 -- 216 3502 0.228 0.2694 -- 99.0
X Ray Diffraction 3.6717 3.7423 -- 205 3565 0.232 0.2565 -- 99.0
X Ray Diffraction 3.7423 3.8187 -- 200 3534 0.2392 0.3009 -- 99.0
X Ray Diffraction 3.8187 3.9017 -- 161 3602 0.2233 0.3517 -- 99.0
X Ray Diffraction 3.9017 3.9924 -- 179 3553 0.2122 0.2605 -- 99.0
X Ray Diffraction 3.9924 4.0922 -- 191 3586 0.2066 0.255 -- 100.0
X Ray Diffraction 4.0922 4.2028 -- 204 3539 0.1975 0.2469 -- 99.0
X Ray Diffraction 4.2028 4.3263 -- 196 3514 0.1884 0.265 -- 99.0
X Ray Diffraction 4.3263 4.4659 -- 226 3564 0.1829 0.2055 -- 100.0
X Ray Diffraction 4.4659 4.6254 -- 184 3575 0.1744 0.2339 -- 100.0
X Ray Diffraction 4.6254 4.8104 -- 199 3565 0.1692 0.1955 -- 99.0
X Ray Diffraction 4.8104 5.0292 -- 178 3571 0.1753 0.2069 -- 100.0
X Ray Diffraction 5.0292 5.294 -- 201 3534 0.1932 0.2167 -- 100.0
X Ray Diffraction 5.294 5.6252 -- 174 3604 0.1896 0.2101 -- 100.0
X Ray Diffraction 5.6252 6.0588 -- 208 3546 0.2068 0.2644 -- 100.0
X Ray Diffraction 6.0588 6.6672 -- 178 3563 0.2096 0.2567 -- 100.0
X Ray Diffraction 6.6672 7.6288 -- 171 3586 0.2047 0.2001 -- 99.0
X Ray Diffraction 7.6288 9.5995 -- 179 3497 0.1735 0.2243 -- 98.0
X Ray Diffraction 9.5995 48.8069 -- 149 3496 0.1894 0.178 -- 97.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.039
f_dihedral_angle_d 15.43
f_angle_d 0.652
f_bond_d 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13530
Nucleic Acid Atoms 1152
Heterogen Atoms 62
Solvent Atoms 0

Software

Computing
Computing Package Purpose
ADSC Quantum Data Collection
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: dev_1078) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: dev_1078) refinement
PHASER model building
ADSC version: Quantum data collection