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X-RAY DIFFRACTION
Materials and Methods page
4FXX
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.5
    Temperature 277.0
    Details 1.34 M sodium malonate pH 6.0, 0.1 M imidazole maleate pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 96.03 α = 90
    b = 37.97 β = 107.38
    c = 144.68 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 325 mm CCD
    Collection Date 2011-12-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRL BEAMLINE BL9-2
    Wavelength List 0.9794
    Site SSRL
    Beamline BL9-2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.48
    Resolution(Low) 48
    Number Reflections(All) 18175
    Number Reflections(Observed) 16211
    Percent Possible(Observed) 89.19
    R Merge I(Observed) 0.108
    Redundancy 5.08
     
    High Resolution Shell Details
    Resolution(High) 2.48
    Resolution(Low) 2.61
    Percent Possible(All) 75.39
    R Merge I(Observed) 0.37
    Redundancy 5.29
    Number Unique Reflections(All) 1959
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.4801
    Resolution(Low) 34.966
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 16049
    Number of Reflections(R-Free) 1271
    Percent Reflections(Observed) 88.6
    R-Factor(Observed) 0.2393
    R-Work 0.2365
    R-Free 0.2698
     
    Temperature Factor Modeling
    Mean Isotropic B Value 46.2666
    Anisotropic B[1][1] 8.843
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.4129
    Anisotropic B[2][2] -6.3552
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.4879
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4801
    Shell Resolution(Low) 2.5793
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 1326
    R-Factor(R-Work) 0.2732
    R-Factor(R-Free) 0.3416
    Percent Reflections(Observed) 72.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5793
    Shell Resolution(Low) 2.6967
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 1359
    R-Factor(R-Work) 0.2567
    R-Factor(R-Free) 0.2809
    Percent Reflections(Observed) 75.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6967
    Shell Resolution(Low) 2.8388
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 1453
    R-Factor(R-Work) 0.2413
    R-Factor(R-Free) 0.3171
    Percent Reflections(Observed) 79.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8388
    Shell Resolution(Low) 3.0165
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 1531
    R-Factor(R-Work) 0.2369
    R-Factor(R-Free) 0.271
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0165
    Shell Resolution(Low) 3.2493
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 1664
    R-Factor(R-Work) 0.2482
    R-Factor(R-Free) 0.2933
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2493
    Shell Resolution(Low) 3.576
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 1785
    R-Factor(R-Work) 0.2248
    R-Factor(R-Free) 0.2359
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.576
    Shell Resolution(Low) 4.0928
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 1856
    R-Factor(R-Work) 0.2157
    R-Factor(R-Free) 0.2438
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0928
    Shell Resolution(Low) 5.1538
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 1876
    R-Factor(R-Work) 0.2073
    R-Factor(R-Free) 0.2555
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1538
    Shell Resolution(Low) 34.9694
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 1928
    R-Factor(R-Work) 0.2777
    R-Factor(R-Free) 0.2988
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.232
    f_plane_restr 0.009
    f_chiral_restr 0.058
    f_angle_d 0.87
    f_bond_d 0.012
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2858
    Nucleic Acid Atoms 0
    Heterogen Atoms 54
    Solvent Atoms 72
     
     
  •   Software and Computing Hide
    Computing
    Data Collection webice
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution Phenix (Phenix.automr: 1.7.1_743
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALA version: CCP4_3.2.19