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X-RAY DIFFRACTION
Materials and Methods page
4FXS
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 5
    Temperature 289.0
    Details 1 M sodium/potassium phosphate, 0.01 M IMP, 0.01 M mycophenolic acid, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 111.96 α = 90
    b = 111.96 β = 90
    c = 188.99 γ = 90
     
    Space Group
    Space Group Name:    I 4 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2012-06-04
     
    Diffraction Radiation
    Monochromator double crystal monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-ID
    Wavelength List 0.9792
    Site APS
    Beamline 19-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.24
    Resolution(Low) 30.6
    Number Reflections(All) 29245
    Number Reflections(Observed) 29245
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.09
    B(Isotropic) From Wilson Plot 56.9
    Redundancy 21.7
     
    High Resolution Shell Details
    Resolution(High) 2.24
    Resolution(Low) 2.28
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.913
    Mean I Over Sigma(Observed) 5.48
    Redundancy 22.1
    Number Unique Reflections(All) 1424
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.24
    Resolution(Low) 30.7
    Cut-off Sigma(I) 0.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 29244
    Number of Reflections(Observed) 29244
    Number of Reflections(R-Free) 1541
    Percent Reflections(Observed) 99.78
    R-Factor(All) 0.1918
    R-Factor(Observed) 0.1918
    R-Work 0.1896
    R-Free 0.2319
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 67.5131
    Anisotropic B[1][1] 0.14
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.14
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.28
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.239
    Shell Resolution(Low) 2.297
    Number of Reflections(Observed) 1938
    Number of Reflections(R-Free) 99
    Number of Reflections(R-Work) 1839
    R-Factor(R-Work) 0.209
    R-Factor(R-Free) 0.262
    Percent Reflections(Observed) 99.9
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.007
    r_chiral_restr 0.111
    r_dihedral_angle_4_deg 19.59
    r_dihedral_angle_3_deg 19.179
    r_dihedral_angle_2_deg 38.823
    r_dihedral_angle_1_deg 6.775
    r_angle_refined_deg 1.74
    r_bond_refined_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3474
    Nucleic Acid Atoms 0
    Heterogen Atoms 47
    Solvent Atoms 87
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SBC-collect
    Data Reduction (intensity integration) HKL-3000
    Data Reduction (data scaling) HKL-3000
    Structure Solution PHENIX
    Structure Refinement REFMAC 5.6.0117
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.6.0117
    data reduction HKL