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X-RAY DIFFRACTION
Materials and Methods page
4FXB
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8
    Temperature 287.0
    Details 0.1M imidazole, 0.2M sodium chloride, 30%(w/v) PEG8000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 287.0K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 133.09 α = 90
    b = 133.09 β = 90
    c = 227.11 γ = 120
     
    Space Group
    Space Group Name:    P 61 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU JUPITER 210
    Collection Date 2012-05-19
     
    Diffraction Radiation
    Monochromator Si double crystal monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL26B1
    Wavelength List 1.0
    Site SPRING-8
    Beamline BL26B1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 18.3
    Observed Criterion Sigma(I) 45.0
    Resolution(High) 2.8
    Resolution(Low) 50
    Number Reflections(Observed) 98528
    Percent Possible(Observed) 88.8
     
    High Resolution Shell Details
    Resolution(High) 2.8
    Percent Possible(All) 88.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.9
    Resolution(Low) 19.93
    Number of Reflections(all) 23686
    Number of Reflections(Observed) 23686
    Number of Reflections(R-Free) 1202
    Percent Reflections(Observed) 91.9
    R-Factor(All) 0.28238
    R-Factor(Observed) 0.28238
    R-Work 0.28131
    R-Free 0.30235
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 46.144
    Anisotropic B[1][1] -0.01
    Anisotropic B[1][2] -0.01
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.01
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.02
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9
    Shell Resolution(Low) 2.974
    Number of Reflections(R-Free) 246
    Number of Reflections(R-Work) 4506
    R-Factor(R-Work) 0.381
    R-Factor(R-Free) 0.38
    Percent Reflections(Observed) 89.53
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.016
    r_chiral_restr 0.197
    r_dihedral_angle_4_deg 23.841
    r_dihedral_angle_3_deg 28.687
    r_dihedral_angle_2_deg 39.145
    r_dihedral_angle_1_deg 12.411
    r_angle_refined_deg 3.499
    r_bond_refined_d 0.026
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5878
    Nucleic Acid Atoms 0
    Heterogen Atoms 86
    Solvent Atoms 57
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASES
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASES
    data collection HKL-2000