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X-RAY DIFFRACTION
Materials and Methods page
4FVM
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 9.4
    Temperature 291.0
    Details 0.1M Bicine, 6% PEG8000, pH 9.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 74.38 α = 90
    b = 127.14 β = 104.78
    c = 74.57 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2009-03-12
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength List 0.9754
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.3
    Resolution(Low) 53.51
    Number Reflections(All) 58906
    Number Reflections(Observed) 58906
    Percent Possible(Observed) 99.3
    R Merge I(Observed) 0.085
    B(Isotropic) From Wilson Plot 42.31
    Redundancy 6.0
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.42
    Percent Possible(All) 99.1
    R Merge I(Observed) 0.512
    Mean I Over Sigma(Observed) 3.0
    R-Sym I(Observed) 0.512
    Redundancy 6.0
    Number Unique Reflections(All) 8523
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 36.512
    Number of Reflections(all) 58809
    Number of Reflections(Observed) 58809
    Number of Reflections(R-Free) 2970
    Percent Reflections(Observed) 98.92
    R-Factor(All) 0.2068
    R-Factor(Observed) 0.2068
    R-Work 0.2052
    R-Free 0.236
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.3377
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2648
    R-Factor(R-Work) 0.3153
    R-Factor(R-Free) 0.3753
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3377
    Shell Resolution(Low) 2.378
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2628
    R-Factor(R-Work) 0.3049
    R-Factor(R-Free) 0.3147
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.378
    Shell Resolution(Low) 2.4212
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2671
    R-Factor(R-Work) 0.2764
    R-Factor(R-Free) 0.3253
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4212
    Shell Resolution(Low) 2.4678
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2654
    R-Factor(R-Work) 0.269
    R-Factor(R-Free) 0.3339
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4678
    Shell Resolution(Low) 2.5182
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.2566
    R-Factor(R-Free) 0.2887
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5182
    Shell Resolution(Low) 2.5729
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.2434
    R-Factor(R-Free) 0.2884
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5729
    Shell Resolution(Low) 2.6327
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2622
    R-Factor(R-Work) 0.2385
    R-Factor(R-Free) 0.2703
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6327
    Shell Resolution(Low) 2.6986
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2660
    R-Factor(R-Work) 0.2265
    R-Factor(R-Free) 0.2766
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6986
    Shell Resolution(Low) 2.7715
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2665
    R-Factor(R-Work) 0.2162
    R-Factor(R-Free) 0.3019
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7715
    Shell Resolution(Low) 2.853
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2683
    R-Factor(R-Work) 0.2098
    R-Factor(R-Free) 0.2643
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.853
    Shell Resolution(Low) 2.9451
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2667
    R-Factor(R-Work) 0.2054
    R-Factor(R-Free) 0.2512
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9451
    Shell Resolution(Low) 3.0503
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2650
    R-Factor(R-Work) 0.2158
    R-Factor(R-Free) 0.2295
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0503
    Shell Resolution(Low) 3.1723
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 2646
    R-Factor(R-Work) 0.2254
    R-Factor(R-Free) 0.2824
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1723
    Shell Resolution(Low) 3.3166
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2685
    R-Factor(R-Work) 0.2149
    R-Factor(R-Free) 0.2451
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3166
    Shell Resolution(Low) 3.4914
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2664
    R-Factor(R-Work) 0.2145
    R-Factor(R-Free) 0.2489
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4914
    Shell Resolution(Low) 3.7099
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2701
    R-Factor(R-Work) 0.2018
    R-Factor(R-Free) 0.2331
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7099
    Shell Resolution(Low) 3.996
    Number of Reflections(R-Free) 162
    Number of Reflections(R-Work) 2660
    R-Factor(R-Work) 0.1977
    R-Factor(R-Free) 0.2369
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.996
    Shell Resolution(Low) 4.3975
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.1769
    R-Factor(R-Free) 0.2037
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3975
    Shell Resolution(Low) 5.0325
    Number of Reflections(R-Free) 170
    Number of Reflections(R-Work) 2678
    R-Factor(R-Work) 0.1603
    R-Factor(R-Free) 0.173
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0325
    Shell Resolution(Low) 6.335
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2691
    R-Factor(R-Work) 0.1916
    R-Factor(R-Free) 0.2183
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.335
    Shell Resolution(Low) 36.5168
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2573
    R-Factor(R-Work) 0.1887
    R-Factor(R-Free) 0.211
    Percent Reflections(Observed) 93.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.037
    f_dihedral_angle_d 12.14
    f_angle_d 0.586
    f_bond_d 0.002
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6627
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 216
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: dev_1078)
     
    Software
    refinement PHENIX version: (phenix.refine: dev_1078)
    model building PHASER
    data collection ADSC version: Quantum