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An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4FUP
  •   Crystallization Hide
    Crystallization Experiments
    Method batch
    pH 7.9
    Temperature 293.0
    Details 0.12 M Postassium Thiocyanate, 0.1 M Tris pH7.9, 28% PEG MME 2000, 0.5% beta-octylglucopyranoside, batch, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 83.1 α = 90
    b = 34.24 β = 101.31
    c = 138.78 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2010-08-23
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.9792
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.5
    Resolution(Low) 50
    Number Reflections(Observed) 13488
    Percent Possible(Observed) 99.4
    R Merge I(Observed) 0.078
    Redundancy 3.6
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.59
    Percent Possible(All) 99.7
    R Merge I(Observed) 0.2
    Redundancy 3.7
    Number Unique Reflections(All) 1297
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.51
    Resolution(Low) 45.36
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 13426
    Number of Reflections(R-Free) 662
    R-Factor(Observed) 0.2219
    R-Work 0.2192
    R-Free 0.2763
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 32.5445
    Anisotropic B[1][1] -2.2319
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -5.8969
    Anisotropic B[2][2] -13.54
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 15.7719
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.51
    Shell Resolution(Low) 2.71
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2548
    R-Factor(R-Work) 0.2611
    R-Factor(R-Free) 0.3577
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 2.82
    t_omega_torsion 3.17
    t_angle_deg 1.28
    t_bond_d 0.01
     
    Coordinate Error
    Luzzati ESD(Observed) 0.366
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2823
    Nucleic Acid Atoms 0
    Heterogen Atoms 2
    Solvent Atoms 108
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement BUSTER 2.8.0
     
    Software
    data extraction pdb_extract version: 3.11
    refinement BUSTER-TNT version: BUSTER 2.8.0
    molecular replacement Phaser
    data reduction SCALEPACK