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An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4FS4
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    Temperature 277.0
    Details VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.5 α = 90
    b = 90.36 β = 90
    c = 131.15 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 95
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU RAXIS IV++
    Collection Date 2004-11-18
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU FR-E DW
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.74
    Resolution(Low) 20
    Number Reflections(All) 105767
    Number Reflections(Observed) 104436
    Percent Possible(Observed) 98.7
    R Merge I(Observed) 0.061
     
    High Resolution Shell Details
    Resolution(High) 1.74
    Resolution(Low) 1.77
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.432
    Number Unique Reflections(All) 5234
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method FOURIER SYNTHESIS
    reflnsShellList 1.74
    Resolution(Low) 19.79
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 105767
    Number of Reflections(Observed) 104357
    Number of Reflections(R-Free) 5217
    Percent Reflections(Observed) 98.68
    R-Factor(Observed) 0.2067
    R-Work 0.2053
    R-Free 0.2331
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.6218
    Anisotropic B[1][1] 4.2325
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -6.3819
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 2.1494
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.74
    Shell Resolution(Low) 1.78
    Number of Reflections(R-Free) 396
    Number of Reflections(R-Work) 7228
    R-Factor(R-Work) 0.2031
    R-Factor(R-Free) 0.228
    Percent Reflections(Observed) 98.68
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 13.77
    t_omega_torsion 4.08
    t_angle_deg 1.0
    t_bond_d 0.01
     
    Coordinate Error
    Luzzati ESD(Observed) 0.209
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6112
    Nucleic Acid Atoms 0
    Heterogen Atoms 68
    Solvent Atoms 836
     
     
  •   Software and Computing Hide
    Computing
    Data Collection StructureStudio
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution CNX
    Structure Refinement BUSTER 2.11.2
     
    Software
    data extraction pdb_extract version: 3.11
    refinement BUSTER-TNT
    data reduction SCALEPACK