POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4FQX
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.5
    Temperature 291.0
    Details pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 66.19 α = 90
    b = 121.65 β = 90
    c = 138.42 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2012-04-20
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.979
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 3.0
    Resolution(High) 2.6
    Resolution(Low) 50
    Number Reflections(Observed) 34280
    Percent Possible(Observed) 97.3
    R Merge I(Observed) 0.059
    Redundancy 3.4
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.69
    Percent Possible(All) 95.0
    R Merge I(Observed) 0.533
    Redundancy 3.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.599
    Resolution(Low) 36.141
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 34135
    Number of Reflections(Observed) 34135
    Number of Reflections(R-Free) 1742
    Percent Reflections(Observed) 97.06
    R-Factor(Observed) 0.1964
    R-Work 0.194
    R-Free 0.2398
     
    Temperature Factor Modeling
    Mean Isotropic B Value 63.9118
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5991
    Shell Resolution(Low) 2.6756
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2509
    R-Factor(R-Work) 0.2639
    R-Factor(R-Free) 0.324
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6756
    Shell Resolution(Low) 2.7619
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2691
    R-Factor(R-Work) 0.263
    R-Factor(R-Free) 0.3312
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7619
    Shell Resolution(Low) 2.8606
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.2619
    R-Factor(R-Free) 0.3394
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8606
    Shell Resolution(Low) 2.9751
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2712
    R-Factor(R-Work) 0.2611
    R-Factor(R-Free) 0.3329
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9751
    Shell Resolution(Low) 3.1104
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2700
    R-Factor(R-Work) 0.2549
    R-Factor(R-Free) 0.303
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1104
    Shell Resolution(Low) 3.2743
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2714
    R-Factor(R-Work) 0.2335
    R-Factor(R-Free) 0.2816
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2743
    Shell Resolution(Low) 3.4793
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2748
    R-Factor(R-Work) 0.2098
    R-Factor(R-Free) 0.2544
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4793
    Shell Resolution(Low) 3.7477
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2696
    R-Factor(R-Work) 0.1911
    R-Factor(R-Free) 0.2427
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7477
    Shell Resolution(Low) 4.1243
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2720
    R-Factor(R-Work) 0.1789
    R-Factor(R-Free) 0.2447
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1243
    Shell Resolution(Low) 4.72
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2707
    R-Factor(R-Work) 0.1455
    R-Factor(R-Free) 0.1797
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.72
    Shell Resolution(Low) 5.9424
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 2717
    R-Factor(R-Work) 0.1541
    R-Factor(R-Free) 0.1946
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.9424
    Shell Resolution(Low) 36.1448
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2805
    R-Factor(R-Work) 0.1855
    R-Factor(R-Free) 0.2139
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.079
    f_dihedral_angle_d 15.957
    f_angle_d 1.188
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6044
    Nucleic Acid Atoms 0
    Heterogen Atoms 28
    Solvent Atoms 124
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) HKL
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.8_1069)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    molecular replacement Phaser
    data reduction HKL