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X-RAY DIFFRACTION
Materials and Methods page
4FQ9
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 4.5
    Temperature 293.0
    Details 18% PEG 3350, 0.12M Sodium Potassium Phosphate, 6.4% Hexanediol,100mM Sodium citrate pH 4.5, vapour diffusion, sitting drop, temperature 293K, VAPOR DIFFUSION, SITTING DROP
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 146.79 α = 90
    b = 135.78 β = 108.82
    c = 111.01 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2010-11-18
     
    Diffraction Radiation
    Monochromator Sl(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength List 0.9919
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.02
    Resolution(Low) 105.07
    Number Reflections(All) 133404
    Number Reflections(Observed) 133404
    Percent Possible(Observed) 98.6
    Redundancy 3.2
     
    High Resolution Shell Details
    Resolution(High) 2.02
    Resolution(Low) 2.07
    Percent Possible(All) 98.3
    R Merge I(Observed) 0.477
    Mean I Over Sigma(Observed) 1.5
    R-Sym I(Observed) 0.477
    Redundancy 2.9
    Number Unique Reflections(All) 9819
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.02
    Resolution(Low) 105.075
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 133404
    Number of Reflections(R-Free) 6719
    Percent Reflections(Observed) 98.54
    R-Factor(Observed) 0.1878
    R-Work 0.1866
    R-Free 0.2108
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 38.1013
    Anisotropic B[1][1] 0.1
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.06
    Anisotropic B[2][2] -0.04
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.02
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.016
    Shell Resolution(Low) 2.068
    Number of Reflections(R-Free) 489
    Number of Reflections(R-Work) 9187
    R-Factor(R-Work) 0.269
    R-Factor(R-Free) 0.292
    Percent Reflections(Observed) 98.2
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.007
    r_gen_planes_refined 0.007
    r_chiral_restr 0.08
    r_dihedral_angle_4_deg 11.637
    r_dihedral_angle_3_deg 13.602
    r_dihedral_angle_2_deg 34.204
    r_dihedral_angle_1_deg 6.212
    r_angle_other_deg 1.403
    r_angle_refined_deg 1.49
    r_bond_other_d 0.007
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 13128
    Nucleic Acid Atoms 0
    Heterogen Atoms 122
    Solvent Atoms 721
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MxCube
    Data Reduction (intensity integration) XSCALE
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0119
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.6.0119
    molecular replacement Phaser
    data reduction SCALA version: 3.3.16