POP-OUT | CLOSE

An Information Portal to 108607 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4FOJ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 4.7
    Temperature 291.0
    Details 0.6 M ammonium sulfate, 0.1 M sodium citrate, pH 4.7, VAPOR DIFFUSION, SITTING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 66.14 α = 90
    b = 84.77 β = 90
    c = 46.99 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2011-11-24
     
    Diffraction Radiation
    Monochromator double flat crystal Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type LNLS BEAMLINE W01B-MX2
    Wavelength List 1.24
    Site LNLS
    Beamline W01B-MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.4
    Resolution(Low) 50
    Number Reflections(All) 50267
    Number Reflections(Observed) 50267
    Percent Possible(Observed) 95.0
    Redundancy 10.8
     
    High Resolution Shell Details
    Resolution(High) 1.4
    Resolution(Low) 1.45
    Percent Possible(All) 68.0
    Mean I Over Sigma(Observed) 1.93
    R-Sym I(Observed) 0.55
    Redundancy 4.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.55
    Resolution(Low) 30.0
    Number of Reflections(all) 36555
    Number of Reflections(Observed) 36555
    Number of Reflections(R-Free) 1962
    Percent Reflections(Observed) 98.36
    R-Factor(Observed) 0.1848
    R-Work 0.18234
    R-Free 0.23194
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 17.828
    Anisotropic B[1][1] -0.01
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.55
    Shell Resolution(Low) 1.59
    Number of Reflections(R-Free) 168
    Number of Reflections(R-Work) 2651
    R-Factor(R-Work) 0.218
    R-Factor(R-Free) 0.275
    Percent Reflections(Observed) 98.84
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.57
    r_scbond_it 2.269
    r_mcangle_it 1.747
    r_mcbond_other 0.257
    r_mcbond_it 1.01
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.007
    r_chiral_restr 0.095
    r_dihedral_angle_4_deg 14.834
    r_dihedral_angle_3_deg 13.354
    r_dihedral_angle_2_deg 35.904
    r_dihedral_angle_1_deg 5.803
    r_angle_other_deg 0.972
    r_angle_refined_deg 1.543
    r_bond_other_d 0.001
    r_bond_refined_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2009
    Nucleic Acid Atoms 0
    Heterogen Atoms 46
    Solvent Atoms 313
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phaser
    Structure Refinement REFMAC 5.5.0110
     
    Software
    refinement REFMAC version: 5.5.0110
    model building Phaser
    data collection HKL-2000