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X-RAY DIFFRACTION
Materials and Methods page
4FNE
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Details 0.1M MES pH 6.0, glycerol, MgSO4, VAPOR DIFFUSION, HANGING DROP
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 52.79 α = 90
    b = 111.62 β = 90
    c = 130.76 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 293.15
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2008-10-09
     
    Diffraction Radiation
    Monochromator SI(III)
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-ID
    Wavelength List 1.00
    Site APS
    Beamline 22-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.78
    Resolution(Low) 65.38
    Number Reflections(All) 9198
    Number Reflections(Observed) 8757
    Percent Possible(Observed) 95.2
    B(Isotropic) From Wilson Plot 72.12
    Redundancy 3.9
     
    High Resolution Shell Details
    Resolution(High) 2.82
    Resolution(Low) 2.92
    Percent Possible(All) 70.0
    R Merge I(Observed) 0.345
    Redundancy 3.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 2.78
    Resolution(Low) 65.38
    Number of Reflections(all) 9198
    Number of Reflections(Observed) 8757
    Number of Reflections(R-Free) 442
    Percent Reflections(Observed) 91.77
    R-Factor(Observed) 0.21088
    R-Work 0.20725
    R-Free 0.28025
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 79.376
    Anisotropic B[1][1] 0.07
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.34
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.41
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.784
    Shell Resolution(Low) 2.857
    Number of Reflections(R-Free) 16
    Number of Reflections(R-Work) 390
    R-Factor(R-Work) 0.326
    R-Factor(R-Free) 0.553
    Percent Reflections(Observed) 59.62
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.005
    r_chiral_restr 0.137
    r_dihedral_angle_4_deg 15.647
    r_dihedral_angle_3_deg 19.466
    r_dihedral_angle_2_deg 40.695
    r_dihedral_angle_1_deg 5.962
    r_angle_refined_deg 1.774
    r_bond_refined_d 0.012
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1999
    Nucleic Acid Atoms 0
    Heterogen Atoms 81
    Solvent Atoms 31
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASES
    Structure Refinement REFMAC 5.6.0111
     
    Software
    refinement REFMAC version: 5.6.0111
    model building PHASES
    data collection HKL-2000