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X-RAY DIFFRACTION
Materials and Methods page
4FN9
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 293.15
    Details 1.0M MgSO4, 10% glycerol, and 100 mM MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 53.47 α = 90
    b = 112.11 β = 90
    c = 132.85 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2008-07-01
     
    Diffraction Radiation
    Monochromator Si(III)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-BM
    Wavelength List 1.0
    Site APS
    Beamline 22-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.73
    Resolution(Low) 49.63
    Number Reflections(All) 20584
    Number Reflections(Observed) 21895
    Percent Possible(Observed) 94.0
    Redundancy 6.8
     
    High Resolution Shell Details
    Resolution(High) 2.75
    Resolution(Low) 2.85
    Percent Possible(All) 96.1
    R Merge I(Observed) 0.443
    Redundancy 5.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0
    Resolution(Low) 49.604
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 20584
    Number of Reflections(Observed) 16557
    Number of Reflections(R-Free) 857
    Percent Reflections(Observed) 99.56
    R-Factor(Observed) 0.2058
    R-Work 0.2029
    R-Free 0.2595
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 5.412
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.5976
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -7.0096
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0
    Shell Resolution(Low) 3.1881
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2558
    R-Factor(R-Work) 0.2743
    R-Factor(R-Free) 0.3556
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1881
    Shell Resolution(Low) 3.4342
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2567
    R-Factor(R-Work) 0.2365
    R-Factor(R-Free) 0.2769
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4342
    Shell Resolution(Low) 3.7797
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2610
    R-Factor(R-Work) 0.1963
    R-Factor(R-Free) 0.2493
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7797
    Shell Resolution(Low) 4.3263
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2598
    R-Factor(R-Work) 0.1761
    R-Factor(R-Free) 0.2411
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3263
    Shell Resolution(Low) 5.4496
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2633
    R-Factor(R-Work) 0.1758
    R-Factor(R-Free) 0.2565
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4496
    Shell Resolution(Low) 49.6112
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2734
    R-Factor(R-Work) 0.2164
    R-Factor(R-Free) 0.2433
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.084
    f_dihedral_angle_d 18.081
    f_angle_d 1.281
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4027
    Nucleic Acid Atoms 0
    Heterogen Atoms 135
    Solvent Atoms 13
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASES
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement REFMAC version: 5.5.0110
    model building PHASES
    data collection HKL-2000