X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Evaporation
pH 6
Temperature 320.0
Details 0.1M MES, 4.0M NACL, pH 6.0, EVAPORATION, temperature 320K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 162.76 α = 90
b = 162.76 β = 90
c = 61.45 γ = 90
Symmetry
Space Group P 42 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- 2010-10-05
Diffraction Radiation
Monochromator Protocol
MIRROR SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PAL/PLS BEAMLINE 6C1 -- PAL/PLS 6C1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.77 50 99.7 0.074 -- -- 15.7 -- 74082 -- 2.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.77 1.83 97.3 0.583 -- 4.6 15.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.771 36.393 -- 1.34 -- 74082 7080 99.53 -- 0.2296 0.2292 0.2484 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7714 1.8157 -- 140 5509 0.2993 0.2813 -- 100.0
X Ray Diffraction 1.8157 1.8648 -- 142 5558 0.2918 0.3404 -- 100.0
X Ray Diffraction 1.8648 1.9197 -- 141 5510 0.2825 0.3516 -- 100.0
X Ray Diffraction 1.9197 1.9816 -- 141 5519 0.2629 0.3156 -- 100.0
X Ray Diffraction 1.9816 2.0524 -- 141 5541 0.2526 0.2746 -- 100.0
X Ray Diffraction 2.0524 2.1346 -- 142 5518 0.2382 0.2677 -- 100.0
X Ray Diffraction 2.1346 2.2317 -- 140 5491 0.2555 0.2668 -- 99.0
X Ray Diffraction 2.2317 2.3494 -- 136 5466 0.2558 0.3003 -- 98.0
X Ray Diffraction 2.3494 2.4965 -- 142 5541 0.2382 0.2634 -- 100.0
X Ray Diffraction 2.4965 2.6892 -- 143 5588 0.2418 0.2649 -- 100.0
X Ray Diffraction 2.6892 2.9598 -- 144 5619 0.2222 0.2354 -- 100.0
X Ray Diffraction 2.9598 3.3878 -- 142 5634 0.2258 0.262 -- 100.0
X Ray Diffraction 3.3878 4.2672 -- 145 5650 0.1904 0.215 -- 99.0
X Ray Diffraction 4.2672 36.401 -- 152 5936 0.2119 0.1978 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.112
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.112
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.224
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.075
f_dihedral_angle_d 15.61
f_angle_d 1.141
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4949
Nucleic Acid Atoms 0
Heterogen Atoms 93
Solvent Atoms 707

Software

Computing
Computing Package Purpose
HKL Data Reduction (intensity integration)
HKL Data Reduction (data scaling)
PHASES Structure Solution
PHENIX (phenix.refine: 1.7.2_869) Structure Refinement
Software
Software Name Purpose
CNS refinement
PHASES model building