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X-RAY DIFFRACTION
Materials and Methods page
4FJ3
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7
    Temperature 277.0
    Details 0.1 M Na-acetate pH 7.0, 0.8 M NaH2PO4 and 1.2 M K2HPO4 , VAPOR DIFFUSION, SITTING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 72.14 α = 90
    b = 102.43 β = 90
    c = 113.89 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type PSI PILATUS 6M
    Collection Date 2011-02-14
     
    Diffraction Radiation
    Monochromator Al2/Al2
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength List 0.9778
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.95
    Resolution(Low) 50
    Number Reflections(All) 62201
    Number Reflections(Observed) 61869
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.052
    B(Isotropic) From Wilson Plot 36.724
     
    High Resolution Shell Details
    Resolution(High) 1.95
    Resolution(Low) 2.0
    Percent Possible(All) 99.5
    R Merge I(Observed) 0.436
    Mean I Over Sigma(Observed) 4.31
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.95
    Resolution(Low) 46.73
    Cut-off Sigma(F) 4.0
    Number of Reflections(all) 62201
    Number of Reflections(Observed) 61868
    Number of Reflections(R-Free) 3094
    Percent Reflections(Observed) 99.46
    R-Factor(Observed) 0.1611
    R-Work 0.1586
    R-Free 0.208
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 35.2967
    Anisotropic B[1][1] -0.07
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.03
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.96
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.95
    Shell Resolution(Low) 2.001
    Number of Reflections(R-Free) 218
    Number of Reflections(R-Work) 4009
    R-Factor(R-Work) 0.143
    R-Factor(R-Free) 0.199
    Percent Reflections(Observed) 99.39
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 13.826
    r_sphericity_free 18.412
    r_rigid_bond_restr 4.498
    r_gen_planes_refined 0.008
    r_chiral_restr 0.126
    r_dihedral_angle_4_deg 16.485
    r_dihedral_angle_3_deg 15.049
    r_dihedral_angle_2_deg 38.333
    r_dihedral_angle_1_deg 4.946
    r_angle_refined_deg 1.724
    r_bond_refined_d 0.026
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3609
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 587
     
     
  •   Software and Computing Hide
    Computing
    Data Collection XDS
    Data Reduction (intensity integration) XSCALE
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0093
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.6.0093
    molecular replacement Phaser
    data reduction Xscale