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X-RAY DIFFRACTION
Materials and Methods page
4FIR
  •   Crystallization Hide
    Crystallization Experiments
    pH 8
    Temperature 297.0
    Details 100mM imidazole, 35% 2-methyl-2,4-pentanediol, 200mM MgCl2, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 59.17 α = 90
    b = 179.07 β = 102.53
    c = 109.36 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210r
    Collection Date 2005-11-23
     
    Diffraction Radiation
    Monochromator SI 111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-5A
    Wavelength 1.0000
    Site PHOTON FACTORY
    Beamline BL-5A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 3.1
    Resolution(Low) 30
    Number Reflections(Observed) 39532
    Percent Possible(Observed) 98.5
    R Merge I(Observed) 0.066
    B(Isotropic) From Wilson Plot 57.7
     
    High Resolution Shell Details
    Resolution(High) 3.1
    Resolution(Low) 3.15
    Percent Possible(All) 85.5
    R Merge I(Observed) 0.23
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.1
    Resolution(Low) 29.84
    Cut-off Sigma(F) 1.38
    Number of Reflections(Observed) 39493
    Number of Reflections(R-Free) 1983
    Percent Reflections(Observed) 98.2
    R-Factor(Observed) 0.187
    R-Work 0.185
    R-Free 0.227
     
    Temperature Factor Modeling
    Mean Isotropic B Value 54.21
    Anisotropic B[1][1] 11.4589
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 7.469
    Anisotropic B[2][2] -19.2139
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 7.7549
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1001
    Shell Resolution(Low) 3.1775
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2246
    R-Factor(R-Work) 0.2803
    R-Factor(R-Free) 0.3533
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1775
    Shell Resolution(Low) 3.2634
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2554
    R-Factor(R-Work) 0.2575
    R-Factor(R-Free) 0.3334
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2634
    Shell Resolution(Low) 3.3593
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.2147
    R-Factor(R-Free) 0.3009
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3593
    Shell Resolution(Low) 3.4675
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2736
    R-Factor(R-Work) 0.2173
    R-Factor(R-Free) 0.266
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4675
    Shell Resolution(Low) 3.5913
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2664
    R-Factor(R-Work) 0.2103
    R-Factor(R-Free) 0.2604
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5913
    Shell Resolution(Low) 3.7348
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2767
    R-Factor(R-Work) 0.2049
    R-Factor(R-Free) 0.2853
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7348
    Shell Resolution(Low) 3.9044
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2745
    R-Factor(R-Work) 0.1759
    R-Factor(R-Free) 0.1992
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9044
    Shell Resolution(Low) 4.1098
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2729
    R-Factor(R-Work) 0.1643
    R-Factor(R-Free) 0.2235
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1098
    Shell Resolution(Low) 4.3665
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2707
    R-Factor(R-Work) 0.1529
    R-Factor(R-Free) 0.1667
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3665
    Shell Resolution(Low) 4.7025
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2755
    R-Factor(R-Work) 0.1462
    R-Factor(R-Free) 0.1827
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7025
    Shell Resolution(Low) 5.1735
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 2704
    R-Factor(R-Work) 0.1736
    R-Factor(R-Free) 0.2116
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1735
    Shell Resolution(Low) 5.917
    Number of Reflections(R-Free) 163
    Number of Reflections(R-Work) 2743
    R-Factor(R-Work) 0.2092
    R-Factor(R-Free) 0.2488
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.917
    Shell Resolution(Low) 7.4357
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 2711
    R-Factor(R-Work) 0.1951
    R-Factor(R-Free) 0.2188
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.4357
    Shell Resolution(Low) 29.8455
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2775
    R-Factor(R-Work) 0.1531
    R-Factor(R-Free) 0.1775
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.009
    f_chiral_restr 0.131
    f_dihedral_angle_d 17.814
    f_angle_d 1.632
    f_bond_d 0.013
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 15119
    Nucleic Acid Atoms 0
    Heterogen Atoms 78
    Solvent Atoms 72
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution CNS
    Structure Refinement PHENIX (PHENIX.REFINE: 1.7.3_928)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix