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X-RAY DIFFRACTION
Materials and Methods page
4FH0
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION
    pH 6.5
    Temperature 298.0
    Details Bis-Tris pH 6.5, ammonium sulfate, PEG 3350, VAPOR DIFFUSION, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 32.2 α = 108.54
    b = 36.67 β = 90.3
    c = 43.28 γ = 111.01
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2009-07-09
     
    Diffraction Radiation
    Monochromator Sagitally focused Si
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength List 0.9537, 0.9797, 0.9795
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.25
    Resolution(Low) 32.14
    Number Reflections(All) 45786
    Number Reflections(Observed) 45785
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.08
    B(Isotropic) From Wilson Plot 12.0
    Redundancy 7.1
     
    High Resolution Shell Details
    Resolution(High) 1.4
    Resolution(Low) 1.47
    Percent Possible(All) 92.4
    R Merge I(Observed) 0.58
    Mean I Over Sigma(Observed) 4.4
    Redundancy 7.0
    Number Unique Reflections(All) 6572
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 1.4
    Resolution(Low) 27.724
    Cut-off Sigma(F) 2.44
    Number of Reflections(all) 32997
    Number of Reflections(Observed) 32992
    Number of Reflections(R-Free) 1676
    Percent Reflections(Observed) 96.52
    R-Factor(Observed) 0.1395
    R-Work 0.1374
    R-Free 0.1772
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 17.6784
    Anisotropic B[1][1] 0.0894
    Anisotropic B[1][2] -0.0136
    Anisotropic B[1][3] -0.1957
    Anisotropic B[2][2] -0.3114
    Anisotropic B[2][3] -0.6843
    Anisotropic B[3][3] 0.222
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4001
    Shell Resolution(Low) 1.4413
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2458
    R-Factor(R-Work) 0.142
    R-Factor(R-Free) 0.2034
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4413
    Shell Resolution(Low) 1.4878
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2577
    R-Factor(R-Work) 0.1235
    R-Factor(R-Free) 0.1813
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4878
    Shell Resolution(Low) 1.541
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2606
    R-Factor(R-Work) 0.1153
    R-Factor(R-Free) 0.1827
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.541
    Shell Resolution(Low) 1.6027
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2603
    R-Factor(R-Work) 0.1175
    R-Factor(R-Free) 0.1748
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6027
    Shell Resolution(Low) 1.6756
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2626
    R-Factor(R-Work) 0.1246
    R-Factor(R-Free) 0.193
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6756
    Shell Resolution(Low) 1.7639
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2608
    R-Factor(R-Work) 0.1289
    R-Factor(R-Free) 0.1945
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7639
    Shell Resolution(Low) 1.8744
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2623
    R-Factor(R-Work) 0.131
    R-Factor(R-Free) 0.1971
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8744
    Shell Resolution(Low) 2.0191
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2631
    R-Factor(R-Work) 0.1269
    R-Factor(R-Free) 0.1818
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0191
    Shell Resolution(Low) 2.2222
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2630
    R-Factor(R-Work) 0.1266
    R-Factor(R-Free) 0.1494
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2222
    Shell Resolution(Low) 2.5436
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2657
    R-Factor(R-Work) 0.13
    R-Factor(R-Free) 0.1641
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5436
    Shell Resolution(Low) 3.2039
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2684
    R-Factor(R-Work) 0.1474
    R-Factor(R-Free) 0.179
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2039
    Shell Resolution(Low) 27.7293
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2613
    R-Factor(R-Work) 0.1555
    R-Factor(R-Free) 0.1766
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 13.934
    f_plane_restr 0.007
    f_chiral_restr 0.076
    f_angle_d 1.303
    f_bond_d 0.01
     
    Coordinate Error
    Luzzati ESD(Observed) 0.27
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1587
    Nucleic Acid Atoms 0
    Heterogen Atoms 15
    Solvent Atoms 202
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Blu-Ice GUI
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution SHARP
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    phasing SHARP
    data reduction SCALA