POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4FGV
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 9
    Temperature 293.0
    Details 22% Polyacrylic acid 5100, 20 mM MgCl2, 0.1 M CHES/NaOH pH 9.0, 4% (v/v) 2,5 hexanediol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 85.12 α = 90
    b = 139.07 β = 90
    c = 174.88 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Details mirrors
    Collection Date 2012-03-13
     
    Diffraction Radiation
    Monochromator Si-111 crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.1
    Wavelength List 0.9184
    Site BESSY
    Beamline 14.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.94
    Resolution(Low) 46.36
    Number Reflections(All) 43049
    Number Reflections(Observed) 43049
    Percent Possible(Observed) 96.4
    Redundancy 3.6
     
    High Resolution Shell Details
    Resolution(High) 2.94
    Resolution(Low) 3.1
    Percent Possible(All) 84.5
    R Merge I(Observed) 0.545
    Mean I Over Sigma(Observed) 1.4
    R-Sym I(Observed) 0.545
    Redundancy 3.3
    Number Unique Reflections(All) 5413
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.941
    Resolution(Low) 45.853
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 43006
    Number of Reflections(R-Free) 2149
    Percent Reflections(Observed) 95.83
    R-Factor(Observed) 0.2214
    R-Work 0.2203
    R-Free 0.2428
     
    Temperature Factor Modeling
    Mean Isotropic B Value 93.0633
    Anisotropic B[1][1] -5.9326
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -6.908
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 12.8406
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9411
    Shell Resolution(Low) 3.0095
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 2327
    R-Factor(R-Work) 0.3579
    R-Factor(R-Free) 0.3804
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0095
    Shell Resolution(Low) 3.0848
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2347
    R-Factor(R-Work) 0.3357
    R-Factor(R-Free) 0.3864
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0848
    Shell Resolution(Low) 3.1682
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.3105
    R-Factor(R-Free) 0.3262
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1682
    Shell Resolution(Low) 3.2614
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2774
    R-Factor(R-Work) 0.2919
    R-Factor(R-Free) 0.3112
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2614
    Shell Resolution(Low) 3.3666
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.2759
    R-Factor(R-Free) 0.2928
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3666
    Shell Resolution(Low) 3.4869
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2772
    R-Factor(R-Work) 0.248
    R-Factor(R-Free) 0.2837
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4869
    Shell Resolution(Low) 3.6265
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2765
    R-Factor(R-Work) 0.2351
    R-Factor(R-Free) 0.2937
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6265
    Shell Resolution(Low) 3.7914
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2804
    R-Factor(R-Work) 0.2206
    R-Factor(R-Free) 0.2471
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7914
    Shell Resolution(Low) 3.9912
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2782
    R-Factor(R-Work) 0.2186
    R-Factor(R-Free) 0.2633
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9912
    Shell Resolution(Low) 4.2411
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2775
    R-Factor(R-Work) 0.1905
    R-Factor(R-Free) 0.233
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2411
    Shell Resolution(Low) 4.5683
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2778
    R-Factor(R-Work) 0.1748
    R-Factor(R-Free) 0.1845
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5683
    Shell Resolution(Low) 5.0275
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2796
    R-Factor(R-Work) 0.1661
    R-Factor(R-Free) 0.2
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0275
    Shell Resolution(Low) 5.7538
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2801
    R-Factor(R-Work) 0.226
    R-Factor(R-Free) 0.2374
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.7538
    Shell Resolution(Low) 7.2446
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2824
    R-Factor(R-Work) 0.2591
    R-Factor(R-Free) 0.2741
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.2446
    Shell Resolution(Low) 45.8586
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2877
    R-Factor(R-Work) 0.1753
    R-Factor(R-Free) 0.1784
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 16.431
    f_plane_restr 0.004
    f_chiral_restr 0.057
    f_angle_d 0.884
    f_bond_d 0.004
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8595
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALA version: 3.3.16
    data collection Mosflm