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X-RAY DIFFRACTION
Materials and Methods page
4FGG
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 298.0
    Details 15-20% PEG 6000, 0.15M NaOAc, 0.1M MES pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 79.01 α = 90
    b = 79.01 β = 90
    c = 107.53 γ = 120
     
    Space Group
    Space Group Name:    P 61 2 2
     
     
  •   Diffraction Hide
    Diffraction Detector
    Detector CCD
    Type BRUKER SMART 6000
    Collection Date 2012-02-01
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type BRUKER AXS MICROSTAR
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.3
    Resolution(Low) 70
    Number Reflections(Observed) 9312
    Percent Possible(Observed) 100.0
    Redundancy 34.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method PDB entry 3M08
    reflnsShellList 2.3
    Resolution(Low) 68.426
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 9308
    Number of Reflections(R-Free) 928
    Percent Reflections(Observed) 99.82
    R-Factor(Observed) 0.2016
    R-Work 0.1967
    R-Free 0.2446
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -1.2214
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.2214
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 2.4429
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.4214
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 1156
    R-Factor(R-Work) 0.2366
    R-Factor(R-Free) 0.2912
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4214
    Shell Resolution(Low) 2.5731
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 1165
    R-Factor(R-Work) 0.2261
    R-Factor(R-Free) 0.2747
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5731
    Shell Resolution(Low) 2.7717
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 1172
    R-Factor(R-Work) 0.2211
    R-Factor(R-Free) 0.2937
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7717
    Shell Resolution(Low) 3.0507
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 1186
    R-Factor(R-Work) 0.1964
    R-Factor(R-Free) 0.2661
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0507
    Shell Resolution(Low) 3.4921
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 1178
    R-Factor(R-Work) 0.1916
    R-Factor(R-Free) 0.2504
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4921
    Shell Resolution(Low) 4.3996
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 1218
    R-Factor(R-Work) 0.1723
    R-Factor(R-Free) 0.1944
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3996
    Shell Resolution(Low) 68.4567
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 1305
    R-Factor(R-Work) 0.1866
    R-Factor(R-Free) 0.2256
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.091
    f_dihedral_angle_d 25.801
    f_angle_d 1.225
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1322
    Nucleic Acid Atoms 0
    Heterogen Atoms 94
    Solvent Atoms 143
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.2_869)