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An Information Portal to 105025 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4FAR
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 303.0
    Details 100 mM magnesium acetate, 150 mM potassium chloride, 10 mM lithium chloride, 50 mM HEPES sodium, pH 7.0, 4% PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 303K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 89.67 α = 90
    b = 95.16 β = 90
    c = 226.11 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2011-11-28
     
    Diffraction Radiation
    Monochromator single crystal Si(220) side bounce
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.9795
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.86
    Resolution(Low) 50
    Number Reflections(All) 44966
    Number Reflections(Observed) 44966
    Percent Possible(Observed) 99.0
    R Merge I(Observed) 0.055
    Redundancy 4.6
     
    High Resolution Shell Details
    Resolution(High) 2.86
    Resolution(Low) 2.93
    Percent Possible(All) 99.2
    R Merge I(Observed) 0.784
    Mean I Over Sigma(Observed) 1.9
    Redundancy 4.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.86
    Resolution(Low) 48.6
    Number of Reflections(Observed) 42697
    Number of Reflections(R-Free) 2269
    Percent Reflections(Observed) 98.55
    R-Factor(Observed) 0.19829
    R-Work 0.19572
    R-Free 0.24641
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 83.832
    Anisotropic B[1][1] -1.03
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.02
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.859
    Shell Resolution(Low) 2.933
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2867
    R-Factor(R-Work) 0.497
    R-Factor(R-Free) 0.513
    Percent Reflections(Observed) 98.44
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.016
    r_chiral_restr 0.162
    r_angle_refined_deg 2.957
    r_bond_refined_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 8475
    Heterogen Atoms 107
    Solvent Atoms 49
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection ADSC