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X-RAY DIFFRACTION
Materials and Methods page
4F9Z
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 293.0
    Details 26% PEG 4000, 125mM sodium acetate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 293.0
    Details 20% PEG 4000, 150mM sodium acetate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 57.83 α = 70.45
    b = 68.36 β = 88.16
    c = 86.78 γ = 64.96
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
    Diffrn ID 2
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX-225
    Collection Date 2012-01-17
    Detector CCD
    Type RAYONIX MX-225
    Collection Date 2011-09-23
     
    Diffraction Radiation
    Monochromator Si-111 crystal
    Diffraction Protocol SINGLE WAVELENGTH
    Monochromator Si-111 crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.1
    Site BESSY
    Beamline 14.1
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.1
    Wavelength List 0.91841
    Site BESSY
    Beamline 14.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2
    Resolution(Low) 57.81
    Number Reflections(All) 54973
    Number Reflections(Observed) 72979
    Percent Possible(Observed) 95.9
    R Merge I(Observed) 0.178
    Redundancy 5.4
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.11
    Percent Possible(All) 95.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.2
    Resolution(Low) 40.675
    Cut-off Sigma(F) 1.97
    Number of Reflections(all) 54973
    Number of Reflections(Observed) 54932
    Number of Reflections(R-Free) 1371
    Percent Reflections(Observed) 96.15
    R-Factor(All) 0.1712
    R-Factor(Observed) 0.171
    R-Work 0.1699
    R-Free 0.2169
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 9.0635
    Anisotropic B[1][2] -0.3947
    Anisotropic B[1][3] -6.5621
    Anisotropic B[2][2] -4.8668
    Anisotropic B[2][3] -0.2829
    Anisotropic B[3][3] -6.252
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.2786
    Number of Reflections(Observed) 5335
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 5335
    R-Factor(R-Work) 0.2412
    R-Factor(R-Free) 0.293
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2786
    Shell Resolution(Low) 2.3699
    Number of Reflections(Observed) 5313
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 5315
    R-Factor(R-Work) 0.2276
    R-Factor(R-Free) 0.2686
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3699
    Shell Resolution(Low) 2.4777
    Number of Reflections(Observed) 5311
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 5311
    R-Factor(R-Work) 0.2161
    R-Factor(R-Free) 0.2755
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4777
    Shell Resolution(Low) 2.6083
    Number of Reflections(Observed) 5348
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 5348
    R-Factor(R-Work) 0.2023
    R-Factor(R-Free) 0.2755
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6083
    Shell Resolution(Low) 2.7717
    Number of Reflections(Observed) 5357
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 5357
    R-Factor(R-Work) 0.1898
    R-Factor(R-Free) 0.2662
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7717
    Shell Resolution(Low) 2.9857
    Number of Reflections(Observed) 5355
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 5355
    R-Factor(R-Work) 0.1876
    R-Factor(R-Free) 0.2429
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9857
    Shell Resolution(Low) 3.286
    Number of Reflections(Observed) 5342
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 5342
    R-Factor(R-Work) 0.17
    R-Factor(R-Free) 0.2265
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.286
    Shell Resolution(Low) 3.7612
    Number of Reflections(Observed) 5394
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 5394
    R-Factor(R-Work) 0.1564
    R-Factor(R-Free) 0.2103
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7612
    Shell Resolution(Low) 4.7376
    Number of Reflections(Observed) 5399
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 5399
    R-Factor(R-Work) 0.1265
    R-Factor(R-Free) 0.1583
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7376
    Shell Resolution(Low) 40.6817
    Number of Reflections(Observed) 5405
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 5405
    R-Factor(R-Work) 0.1537
    R-Factor(R-Free) 0.1774
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.072
    f_dihedral_angle_d 15.639
    f_angle_d 1.07
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8685
    Nucleic Acid Atoms 0
    Heterogen Atoms 92
    Solvent Atoms 646
     
     
  •   Software and Computing Hide
    Computing
    Data Collection mxCuBE
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution SHELXS
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building SHELXS
    data collection mxCuBE