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X-RAY DIFFRACTION
Materials and Methods page
4F8Z
  •   Crystallization Hide
    Crystallization Experiments
    pH 6
    Details COUNTER-DIFFUSION. protein solution: 250 mM NaCl, 1 mM CaCl2, 10 mM Mes/NaOH, pH 6.0. precipitant solution: 1.4 M (NH4)2SO4, 5% MPD, 50 mM, Mes/NaOH, pH 6.0, 2.4 M Boc-L-Leu
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 157.91 α = 90
    b = 157.91 β = 90
    c = 104.07 γ = 120
     
    Space Group
    Space Group Name:    P 63 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX225HE
    Details mirrors
    Collection Date 2010-12-13
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL41XU
    Wavelength List 0.8
    Site SPRING-8
    Beamline BL41XU
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.12
    Resolution(Low) 30
    Number Reflections(All) 286940
    Number Reflections(Observed) 286940
    Percent Possible(Observed) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.38
    Resolution(Low) 14.0
    Number of Reflections(Observed) 146524
    Number of Reflections(R-Free) 7780
    Percent Reflections(Observed) 99.27
    R-Factor(Observed) 0.13986
    R-Work 0.13922
    R-Free 0.1519
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 17.185
    Anisotropic B[1][1] 0.04
    Anisotropic B[1][2] 0.02
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.04
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.05
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.38
    Shell Resolution(Low) 1.415
    Number of Reflections(R-Free) 526
    Number of Reflections(R-Work) 10026
    R-Factor(R-Work) 0.253
    R-Factor(R-Free) 0.255
    Percent Reflections(Observed) 98.99
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 9.251
    r_bond_refined_d 0.007
    r_bond_other_d 0.0
    r_angle_refined_deg 1.194
    r_angle_other_deg 0.384
    r_dihedral_angle_1_deg 6.169
    r_dihedral_angle_2_deg 29.713
    r_dihedral_angle_3_deg 10.885
    r_dihedral_angle_4_deg 14.022
    r_chiral_restr 0.081
    r_gen_planes_refined 0.005
    r_rigid_bond_restr 0.975
    r_sphericity_free 21.819
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2581
    Nucleic Acid Atoms 0
    Heterogen Atoms 168
    Solvent Atoms 419
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection HKL-2000