X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details 15% Jeffamine ED-2003 titrated to pH 7, 10% ethanol, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 180.72 α = 90
b = 65.3 β = 92.47
c = 99.35 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2011-10-20
Diffraction Radiation
Monochromator Protocol
XXX SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 49.6 96.2 -- -- -- 2.69 91669 88058 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.01 96.2 -- 0.582 -- 2.71 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.898 49.627 -- 1.99 -- 88054 4426 96.06 -- 0.1827 0.1807 0.2213 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8982 1.9198 -- 117 2518 0.3128 0.3502 -- 85.0
X Ray Diffraction 1.9198 1.9424 -- 161 2697 0.2978 0.3669 -- 96.0
X Ray Diffraction 1.9424 1.9661 -- 147 2777 0.2638 0.32 -- 96.0
X Ray Diffraction 1.9661 1.991 -- 151 2782 0.2431 0.2719 -- 96.0
X Ray Diffraction 1.991 2.0172 -- 155 2724 0.2281 0.2544 -- 96.0
X Ray Diffraction 2.0172 2.0448 -- 132 2830 0.2239 0.2684 -- 96.0
X Ray Diffraction 2.0448 2.074 -- 127 2780 0.2199 0.2429 -- 96.0
X Ray Diffraction 2.074 2.105 -- 137 2795 0.2155 0.2682 -- 96.0
X Ray Diffraction 2.105 2.1379 -- 151 2762 0.2018 0.2656 -- 97.0
X Ray Diffraction 2.1379 2.1729 -- 141 2786 0.2 0.2338 -- 96.0
X Ray Diffraction 2.1729 2.2104 -- 158 2768 0.1913 0.2247 -- 97.0
X Ray Diffraction 2.2104 2.2506 -- 149 2823 0.1949 0.2771 -- 97.0
X Ray Diffraction 2.2506 2.2939 -- 166 2754 0.191 0.2274 -- 97.0
X Ray Diffraction 2.2939 2.3407 -- 142 2837 0.1947 0.2757 -- 97.0
X Ray Diffraction 2.3407 2.3916 -- 146 2763 0.194 0.2761 -- 97.0
X Ray Diffraction 2.3916 2.4472 -- 136 2823 0.1849 0.2236 -- 97.0
X Ray Diffraction 2.4472 2.5084 -- 150 2813 0.1905 0.2681 -- 97.0
X Ray Diffraction 2.5084 2.5762 -- 159 2775 0.1942 0.2391 -- 97.0
X Ray Diffraction 2.5762 2.652 -- 141 2831 0.1909 0.2685 -- 97.0
X Ray Diffraction 2.652 2.7376 -- 165 2801 0.1879 0.2564 -- 97.0
X Ray Diffraction 2.7376 2.8355 -- 163 2841 0.1848 0.2321 -- 98.0
X Ray Diffraction 2.8355 2.949 -- 166 2767 0.1905 0.2586 -- 97.0
X Ray Diffraction 2.949 3.0832 -- 137 2853 0.1947 0.2186 -- 97.0
X Ray Diffraction 3.0832 3.2457 -- 130 2815 0.1873 0.238 -- 97.0
X Ray Diffraction 3.2457 3.449 -- 171 2798 0.1796 0.2089 -- 96.0
X Ray Diffraction 3.449 3.7152 -- 143 2819 0.1651 0.1818 -- 96.0
X Ray Diffraction 3.7152 4.0889 -- 149 2801 0.1531 0.1859 -- 96.0
X Ray Diffraction 4.0889 4.6802 -- 153 2811 0.1235 0.1504 -- 96.0
X Ray Diffraction 4.6802 5.8951 -- 138 2889 0.1478 0.1796 -- 97.0
X Ray Diffraction 5.8951 49.6438 -- 145 2795 0.2014 0.2321 -- 92.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -6.4478
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -3.0352
Anisotropic B[2][2] 8.7345
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.2867
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.008
f_chiral_restr 0.114
f_dihedral_angle_d 14.62
f_angle_d 1.583
f_bond_d 0.015
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7985
Nucleic Acid Atoms 0
Heterogen Atoms 13
Solvent Atoms 372

Software

Computing
Computing Package Purpose
MXCUBE Data Collection
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: 1.7.1_743) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.1_743) refinement
PHASER model building
MXCUBE data collection