X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5.5
Temperature 293.0
Details 0.1 M Bis-Tris and 10% (w/v) polyethylene glycol 3,350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 52.84 α = 97.7
b = 66.58 β = 101.03
c = 70.36 γ = 111.84
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS VII -- 2010-11-13
Diffraction Radiation
Monochromator Protocol
SI 111 CHANNEL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU MICROMAX-007 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 50 96.1 0.045 0.045 -- 3.3 -- 90267 -- -3.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.7 1.76 93.8 0.289 0.289 4.264 3.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.7 24.42 -- 0.09 -- 86431 4329 91.9 -- 0.197 0.196 0.227 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6973 1.7166 -- 113 2275 0.2464 0.2782 -- 77.0
X Ray Diffraction 1.7166 1.7368 -- 115 2392 0.235 0.3152 -- 80.0
X Ray Diffraction 1.7368 1.758 -- 127 2535 0.2288 0.2544 -- 83.0
X Ray Diffraction 1.758 1.7802 -- 122 2493 0.2238 0.2605 -- 84.0
X Ray Diffraction 1.7802 1.8036 -- 156 2572 0.2173 0.2731 -- 85.0
X Ray Diffraction 1.8036 1.8283 -- 148 2522 0.2273 0.2894 -- 87.0
X Ray Diffraction 1.8283 1.8544 -- 116 2643 0.2173 0.2445 -- 88.0
X Ray Diffraction 1.8544 1.8821 -- 149 2671 0.2262 0.2806 -- 89.0
X Ray Diffraction 1.8821 1.9115 -- 149 2622 0.2133 0.2341 -- 90.0
X Ray Diffraction 1.9115 1.9428 -- 154 2718 0.2105 0.2534 -- 91.0
X Ray Diffraction 1.9428 1.9763 -- 148 2711 0.2098 0.2434 -- 92.0
X Ray Diffraction 1.9763 2.0122 -- 156 2743 0.2011 0.2673 -- 92.0
X Ray Diffraction 2.0122 2.0509 -- 153 2780 0.2 0.242 -- 93.0
X Ray Diffraction 2.0509 2.0928 -- 162 2802 0.1961 0.2226 -- 94.0
X Ray Diffraction 2.0928 2.1382 -- 142 2829 0.1999 0.2343 -- 95.0
X Ray Diffraction 2.1382 2.1879 -- 142 2852 0.1933 0.2383 -- 95.0
X Ray Diffraction 2.1879 2.2426 -- 152 2816 0.1983 0.2132 -- 95.0
X Ray Diffraction 2.2426 2.3032 -- 179 2883 0.1909 0.2382 -- 96.0
X Ray Diffraction 2.3032 2.3709 -- 145 2836 0.1987 0.2192 -- 96.0
X Ray Diffraction 2.3709 2.4474 -- 129 2892 0.1937 0.2179 -- 97.0
X Ray Diffraction 2.4474 2.5348 -- 153 2885 0.1995 0.2121 -- 97.0
X Ray Diffraction 2.5348 2.6362 -- 154 2906 0.197 0.2249 -- 97.0
X Ray Diffraction 2.6362 2.756 -- 156 2885 0.1987 0.2169 -- 97.0
X Ray Diffraction 2.756 2.9011 -- 160 2887 0.1885 0.2414 -- 97.0
X Ray Diffraction 2.9011 3.0825 -- 144 2945 0.193 0.1989 -- 98.0
X Ray Diffraction 3.0825 3.32 -- 140 2932 0.1815 0.2303 -- 98.0
X Ray Diffraction 3.32 3.6531 -- 142 2893 0.173 0.1861 -- 97.0
X Ray Diffraction 3.6531 4.1794 -- 164 2836 0.159 0.2036 -- 95.0
X Ray Diffraction 4.1794 5.2569 -- 138 2730 0.1606 0.1773 -- 91.0
X Ray Diffraction 5.2569 24.4206 -- 121 2616 0.1966 0.2152 -- 87.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 7.7703
Anisotropic B[1][2] 7.8818
Anisotropic B[1][3] -0.2931
Anisotropic B[2][2] -2.7935
Anisotropic B[2][3] -2.0969
Anisotropic B[3][3] -4.9768
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.079
f_dihedral_angle_d 17.698
f_angle_d 0.912
f_bond_d 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6242
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 881

Software

Computing
Computing Package Purpose
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
AMORE Structure Solution
PHENIX (PHENIX.REFINE: 1.5_2) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.5_2) refinement
AMoRE model building
CrystalClear data collection